Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00548 ATGGAAGACGGGGAGACGAACAAAGTTGTTGATGTGGCACCGGCCCTGATTGCAGTTCACCCAGACCAAAAATCTGTTGCCGTCGCCGTTGGAGCGGACCTGCGTGTATTCGATCTTCATGCTGGTTCTGCAGCTTCTTTTGTTGATGAATCTGGCAGCCCATTTCATAAGGATTCTATAAGAGATATTCGGTTTGGTGCAAAAGGGAAACTTTTTGTATCTGCGGGTGATGATAAAATTGTCAAGATATGGTCAGCAGAATTTTGGCGGTGCATCTGTACTGTGTCCTCAGAAAAAAGAGTCACTGCAGTTGCCATAAGCAACGATGGTTCCTATGTCTGTTTTGCTGACAAATTTGGGGTTGTCTGGGTTGTGGATCTGACTGGATATGATGGCAATCAACCGTTAGTTAATAATAAGAAAGCAACACCACTGCTTTCTCACTATTGTAGTATCATCACAAACTTGGAATTTTCACCGGATGGTCAGTTTATTGTTAGCGCTGATCGGGATTTTAAAATCCGTGTTACTGTTTTTCCGAGTAATCCCGTAAATGGAGCTCATGAGATACAGAATTTCTGTCTTGGTCATACAGAGTTTGTCTCCTGCCTGGCCTTTGTTCAGGCTCAAGAATACCCTCACGGCCTTCTTATCTCCGGGAGTGGTGATTCGACAGTGCGATTATGGGATATATTGTCTGGAGCACTTCTAGATACATGTGAAGTCGCAACTAAGGCAGGACTTTTAGAGTCTAATGGTAAATCAGAGGAACATGGCCATGCTGTTTCTGATTTATGCACCACCTTGGATGGTTCGCTTATTGCAGTGGCCATCCAGAGCTTGCAAGGAATAATACTATTGAAATGCAACCTTGCGACACGAACACTTTCTTTTTCCGAGTTGGTTTCTATTGTTGGAGAGGCCTTCGTTCCTGCCAGCCTCTGCAACAGCTCCTCTACGGGGATATTGTGGATGGTAACAGGTGCCTCTAATTTACCTGGTTCTAGTCACCCCTCTTTGGCTCGTATCCGGGCAATTTCTGGTTTTGCTGTTGAGCAAGAGCCAACCGCTTTGGAAGATGATAAGATACCTGGCGGAGAGCGGCTGCTAGAAACTTTGCAGGGAAGTGCATCTGTTGATGATACTGTTTTCCTGGCAGCTGCTGAAGCTGTGAAAACAGCAATGTGTAATCTATTAATTAAAAAGCAATACCCTGCAGAGAACAGAGAATCTAAGAAGAGAACCAGAAATGATAAAAAATTCAAACTGTAGCAATGCCAATCTTCTCTTTGTTCTTATTTATTTATTTATTATTATTATTATTATTATTTCTTTGTTTGTTAGTGATACATATGGATCAGCCAATGTCGTACCCTTGTGTGTGGTTACCTGCGGTAGTGTTTTTGATCCTTCCTATTTATTCTTTAATAATCTTTGTAAA 1441 0.424 MEDGETNKVVDVAPALIAVHPDQKSVAVAVGADLRVFDLHAGSAASFVDESGSPFHKDSIRDIRFGAKGKLFVSAGDDKIVKIWSAEFWRCICTVSSEKRVTAVAISNDGSYVCFADKFGVVWVVDLTGYDGNQPLVNNKKATPLLSHYCSIITNLEFSPDGQFIVSADRDFKIRVTVFPSNPVNGAHEIQNFCLGHTEFVSCLAFVQAQEYPHGLLISGSGDSTVRLWDILSGALLDTCEVATKAGLLESNGKSEEHGHAVSDLCTTLDGSLIAVAIQSLQGIILLKCNLATRTLSFSELVSIVGEAFVPASLCNSSSTGILWMVTGASNLPGSSHPSLARIRAISGFAVEQEPTALEDDKIPGGERLLETLQGSASVDDTVFLAAAEAVKTAMCNLLIKKQYPAENRESKKRTRNDKKFKL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00548 423 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 13 98 - -
Bach8g00548 423 Gene3D - 14 98 IPR015943 GO:0005515
Bach8g00548 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 85 - -
Bach8g00548 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 415 IPR028884 GO:0036265
Bach8g00548 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 85 IPR001680 GO:0005515
Bach8g00548 423 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Bach8g00548 423 SMART WD40_4 40 85 IPR001680 GO:0005515
Bach8g00548 423 SMART WD40_4 139 178 IPR001680 GO:0005515
Bach8g00548 423 SMART WD40_4 88 126 IPR001680 GO:0005515
Bach8g00548 423 SMART WD40_4 186 230 IPR001680 GO:0005515
Bach8g00548 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 239 IPR001680 GO:0005515
Bach8g00548 423 SUPERFAMILY WD40 repeat-like 17 276 IPR036322 GO:0005515
Bach8g00548 423 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 357 - -
Bach8g00548 423 PANTHER WD40 REPEAT PROTEIN 4 14 417 IPR028884 GO:0036265
Bach8g00548 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 231 - -
Bach8g00548 423 Gene3D - 99 299 IPR015943 GO:0005515
Bach8g00548 423 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Bach8g00548 423 Pfam WD domain, G-beta repeat 147 176 IPR001680 GO:0005515
Bach8g00548 423 Pfam WD domain, G-beta repeat 195 230 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00548 Bach-Chr8 3529461 3532834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00548 165 241 Acyl Lipid Metabolism Gene Families AT3G18860 37.975 5.55e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00548 K15443 - qsa:O6P43_007011 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00548 8 3529461 3532834 Bach8g00548 8 3529461 3532834 ECH