LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g00365	ATGGCTCCCTCCCGTCGGCAGAGCAATGGCCGATCGCCTCTCGTCAATCCACAGCGCCAGATTACTTCTTTCTTCTCTAAATCCACGTCTCCATCTCCATCTCCTTCCCCCATTTTAGCCAAGCGAAACTCTCCTAACCCTAATTCAAAAAATGCAGACCCTAGTTGCCCTAGTCCCAGTCCCACCACACCTTCCCCTCACAATCCCAAACACAAGAAACCCCTCCTCCTCGTCGGCGCTTCATCACCATTCACTCCTTCTCCTCCGTCTTTAGTATCTGTTGGTAAGCAGTCCTACGGACAAGATCAGGTTGGGAGAAGGATCAAGGTTTACTGGCCATTGGATAAAGCCTGGTACGAAGGTTGTATCAAATCTTTTGATGAGGCTACTGGTAAGCATTTGGTTAAATACGACGATGACGAAGAGGAATTATTGGACCTCGCTAAGGAGAAGATTGAATGGGTTCAAGAAACGTTCAGTAAGTTGAAACGGCTACGTCGCGGCATTTCTACTCTCAAGCAGGTCGTCTTTGACGACGACGAGGGGACAGAGAATGTGATGGAAGAAAGTCCTGATGTTGATGTTGCTGATGATGATTCTAGTGATGAAGACTGGGGGAAGAATGAGGCGGTTGAGGAGTCTAATGACGATAAAGACGACATGGAGCTAGAGGAGGAGGATGAGGACCAAAAGGATGAAGCGGAGAAGACAAAAGGAAAGCGAATAGTGACGGTCGGGTGCAAAAAGCGGAAGCTAGGTGGAGTGCAGAAATCGAGGTCTGCAAAGAAGAGCAAGAGCGGAGGAGAAACTGATAAGGGAAGTTTAAAGGTCTCAATGTTGGAGAGTACTAGTAATTTGGAGATTAAAAAGGCATCCAATGGCATTGACAATGCGTCTGCTGGTGACGCCTCCGAAAGATTTGCAGTGCGAGAAACTCAGAAATTCCGCTTCCTTAGAGAAGATCGAAGGGATGCCAAAAGAAGATGTCTTGGAGATGAAAATTATGACTCAAGAACTCTATACTTGCCTCCTGATTTCTTAAAGAGTCTGTCAGGTGGACAGAGACAATGGTGGGAGTTCAAGTCCAAGCACATGGACAAAGTTCTGTTTTTTAAGATGGGTAAATTTTATGAACTGTTTGAAATGGATGCACATGTTGGAGTGAAAGAGCTTGATTTACAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCAGAGAAAAATTTCTCTATAAATGTTGAGAAATTGGCGAAGAAGGGTTACCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGTAAAGAAAAGGGTTCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTGGTTACAAAAGGCACGTTAACTGATGGGGAGTGGATGTCAGCAAACCCAGAAGCTTCATATCTAATGGCAGTGACTGAGCACCAAAACCAGTCAAATGAAAGCTGGGAGTGTATATATGGTGTTTGTGTAATAGATGTTGCCACCAGCAGAATCATACTTGGACAGTTTAGGGATGATTCAGACCGCAGTGCCTTATGCAGTCTCTTATCTGAGCTTAGACCAGTTGAAATTGTGAAACCTGCTAAAATACTTAGTGCTGAAACAGAGAGGGTACTACTGAAGCACACAAGAAATCCTCTAGTCAATGAATTAGTTCCAGCTGTAGAATTCTGGGATGCTGAGAAAACTATTCATGAAGTGAAGAGAATTTACAGGCACAGTGTTGATTCTGTTATGGAAAATGAAGGGTTGAGCCCCCTACCAGATGTTTTTCTGGAGCTGGTTAAAGCAGGTGACAGTGGTACACGTGCACTTTCAGCACTTGGTGGCGCTCTTTATTATCTGAAACAAGCTTTCCTTGAAGAGACATTACTTAGATTTGCTCATTTTGAGTTACTTCCATCTTCTGGTTTCAATAATATTACTTCAAAGCCATACATGGTTCTTGATGCAGCAGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGATTCTTCAGGCACCCTTTATGCACAATTGGACCAATGTGTCACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCATTATGCCATTTAGAGTCAATCAAGGAACGCCAGGAAGCTGTGGCAGGTTTGAGGGGAGTTAATCTACCTTCTGCATTAGAATTTAGGAAGGCATTATCAAAGCTACCAGACATGGAGCGGTTGCTTGCACGGATATTCTCTAGCAGTGAAGGGAGTGGAAGGAATGCTAGTAAAGTGGTTTTGTATGAGGATGCTGCAAAGAAACAACTCCAAGAGTTTATTTCAGTGCTGCGTGGTTGTGAACTAATGGTAAAAGCATGTTCTGAACTTGGTGTCATCTTGAGTGCTGTTGAATCTAGACAACTTCTTCATCTGTTAACAACAGGTAAAGGTCTTCCCGATGTCTGTATGGCTCTAAACCATTTCAAGGATGCTTTTGATTGGGTGGAAGCCAATAACTCTGGACGTATAGTACCTCATGAAGGAGTTGATATGGAGTATGACTCGTCCTGTAAAGCAGTCAAGGAGATTGAATCTAGTTTGTCGAAGCATCTCAAGGAACAGAAAAAATTACTTGGAGATTCATCTATCACCTATGTCACTGTTGGAAAGGATTCATATTTGTTGGAAGTGCCAGAAAGTTTGCGTGGGAATATTCCTCGGGCCTATGAGCTGCATTCATCAAGAAAAGGTTTCTTCAGGTACTGGAACCCAGATATTAAAAAGTTCTTGAGAGAGCTCTCACAAGCTGAATCTGAGAAAGAGTCCTCATTGAAAAGCATATTGCAGAGGTTAATTGGGCGTTTCTGTGAACACCACACCCAGTGGAGGCAATTGGTGTCCACAACTGCTGAGCTTGATGTTTTGATCAGTTTTGCTATTGTTAATGATTACTATGAAGGACCAACATGCCAACCGAGTTTCTTAGGCTCATTAAGTTCAAAAGAAGCTCCATGCCTCTCAGCTAAAAGTTTGGGACACCCAGTCCTTAGAAGTGATTCTTTGGGCAAGGGTAGTTTTGTCCCCAATGACGTGACCATTGGTGGTCCACATAAGGCCAGTTTCTTACTTCTCACTGGTCCTAATATGGGAGGAAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCTCAGGTTGGTGCAGATGTCCCTGCAGTGAGTTTTAATTTGTCACTTGTAGACCGAATTTTTGTTCGAATGGGTGCAAGAGATAATATTATGGGTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACAGCCACAATGCTGTCATCAGCCACTCGTAATTCATTGGTGGCTCTAGATGAGCTTGGACGTGGAACCTCAACTTCGGATGGGCAAGCCATTGCGGAATCAGTACTAGAGCATTTTGTACGGAAGGTGCAGTGTCGCGGAATGTTTGCTACTCATTATCACCGGTTAGCTATAGATTATCACAATGATCCCAAGGTCTCTCTCTGCCATATGGCATGCCAAGTAGGCAATGGAATTGGAGGTGTGGATGAAGTCACATTTCTTTACCGGTTGACCCCCGGTACTTGCCCCAAGAGTTATGGCGTTAATGTTGCTCGGTTAGCTGGACTTCCCACTTCCGTGCTTCAAAAGGCTGCTGCTAAATCGCGAGAATTCGAGGCCTCATATGGTAAGTGCAGAAGGATGTCTTCTGATAACACCTCTTCTGGTCAAAGTTGGGTTGATGAGACGGGAGTCATCTTAAAAAAATTAGTGAATACCGCTACGAGTTCGGGTTACCAGGACAAACTTAGCGATAGTTCCCTTGGTGAACTTCAGAGTAAAGCACGAGTGCTCTTGCAGCAATGTTAAACTATTCCAATATACAGGTATTAGAGTAATTGCAGTAATATCAAAGTCCGTACTAGCGATTTTTTTTGAAAGCGAGAAATGCATGTAGCCATATTCAATGTTGATGGGATGATAGGATG	4010	0.4362	MAPSRRQSNGRSPLVNPQRQITSFFSKSTSPSPSPSPILAKRNSPNPNSKNADPSCPSPSPTTPSPHNPKHKKPLLLVGASSPFTPSPPSLVSVGKQSYGQDQVGRRIKVYWPLDKAWYEGCIKSFDEATGKHLVKYDDDEEELLDLAKEKIEWVQETFSKLKRLRRGISTLKQVVFDDDEGTENVMEESPDVDVADDDSSDEDWGKNEAVEESNDDKDDMELEEEDEDQKDEAEKTKGKRIVTVGCKKRKLGGVQKSRSAKKSKSGGETDKGSLKVSMLESTSNLEIKKASNGIDNASAGDASERFAVRETQKFRFLREDRRDAKRRCLGDENYDSRTLYLPPDFLKSLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSINVEKLAKKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGEWMSANPEASYLMAVTEHQNQSNESWECIYGVCVIDVATSRIILGQFRDDSDRSALCSLLSELRPVEIVKPAKILSAETERVLLKHTRNPLVNELVPAVEFWDAEKTIHEVKRIYRHSVDSVMENEGLSPLPDVFLELVKAGDSGTRALSALGGALYYLKQAFLEETLLRFAHFELLPSSGFNNITSKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLDQCVTAFGKRLLKTWLARPLCHLESIKERQEAVAGLRGVNLPSALEFRKALSKLPDMERLLARIFSSSEGSGRNASKVVLYEDAAKKQLQEFISVLRGCELMVKACSELGVILSAVESRQLLHLLTTGKGLPDVCMALNHFKDAFDWVEANNSGRIVPHEGVDMEYDSSCKAVKEIESSLSKHLKEQKKLLGDSSITYVTVGKDSYLLEVPESLRGNIPRAYELHSSRKGFFRYWNPDIKKFLRELSQAESEKESSLKSILQRLIGRFCEHHTQWRQLVSTTAELDVLISFAIVNDYYEGPTCQPSFLGSLSSKEAPCLSAKSLGHPVLRSDSLGKGSFVPNDVTIGGPHKASFLLLTGPNMGGKSTLLRQVCLAVILAQVGADVPAVSFNLSLVDRIFVRMGARDNIMGGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGMFATHYHRLAIDYHNDPKVSLCHMACQVGNGIGGVDEVTFLYRLTPGTCPKSYGVNVARLAGLPTSVLQKAAAKSREFEASYGKCRRMSSDNTSSGQSWVDETGVILKKLVNTATSSGYQDKLSDSSLGELQSKARVLLQQC	1296

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach8g00365	1296	FunFam	DNA mismatch repair protein	308	471	-	-
Bach8g00365	1296	Gene3D	-	95	154	-	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	253	274	-	-
Bach8g00365	1296	SUPERFAMILY	DNA repair protein MutS, domain III	660	980	IPR036187	-
Bach8g00365	1296	Gene3D	-	658	978	-	-
Bach8g00365	1296	PIRSF	Msh6	2	1278	IPR017261	GO:0006298\|GO:0030983
Bach8g00365	1296	SMART	DNAend	677	1018	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	FunFam	DNA mismatch repair protein	989	1263	-	-
Bach8g00365	1296	SMART	mutATP5	1038	1230	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	CDD	Tudor_Agenet_AtEML-like	104	154	-	-
Bach8g00365	1296	Pfam	MutS domain V	1042	1232	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	SUPERFAMILY	DNA repair protein MutS, domain II	471	672	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	FunFam	DNA mismatch repair protein	823	954	-	-
Bach8g00365	1296	Gene3D	-	989	1264	IPR027417	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	181	206	-	-
Bach8g00365	1296	Pfam	MutS domain II	476	629	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	52	68	-	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	215	231	-	-
Bach8g00365	1296	Pfam	MutS domain I	353	466	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	Gene3D	-	823	954	-	-
Bach8g00365	1296	SUPERFAMILY	DNA repair protein MutS, domain I	339	462	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	Gene3D	DNA repair protein MutS, domain I	308	469	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	Coils	Coil	211	231	-	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	1	51	-	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	83	99	-	-
Bach8g00365	1296	SUPERFAMILY	Tudor/PWWP/MBT	103	143	-	-
Bach8g00365	1296	Gene3D	MutS, connector domain	475	657	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	354	1240	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Bach8g00365	1296	Pfam	MutS domain III	663	978	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	180	239	-	-
Bach8g00365	1296	Pfam	MutS family domain IV	847	938	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Bach8g00365	1296	Coils	Coil	925	945	-	-
Bach8g00365	1296	MobiDBLite	consensus disorder prediction	1	99	-	-
Bach8g00365	1296	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1002	1233	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g00365	Bach-Chr8	2404253	2412375	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g00365	K08737		-	gmx:100811104	1835.85

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach8g00365	8	2404253	2412375	Bach8g00365	8	2404253	2412375	ECH