Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00887 ATGTTCCTCTTACTCATTCATTCTTCCACCCTCCTCTTCACCCTTCTCCTCTTCATTCCTCTTCCATGCATTGTTTCAAGACCACTCACATTCTCTCCGGTCACCAAAATATCTCTCACAAATCATAACATCCAACACCTCGCTGACGCCGGGAAAGGCAGCAGTGTCACCGGCATATCAGAAATCAAAAAGTACTTCTCCCATTTTGGCTACATTTTGCAAAACAACAGTACTTTCTCTGACGTCTTTGACGCTGAGTTCGAATCGGCACTTAACCTATACCAGCAGAAGCTTGGCCTCCAAGTCACTGGCACGCTCGATTCCGACACACTTTCTCAAATCACCACACCCAGATGTGGCGTACCAGATAAAATCAATGTTCATTCCTTCCATTCAACGAAACATTACCTTTATTTTCCGGGAAAACCTCGCTGGGCTCGTCCCATGCCAATGTCACTGACCTACGCATTCTCTCGAGAGTATATGATACGTAGCTTGAGCTTGCATGAAATAAGAGAAGCATTTAAACGTGCATTCTCGAGATGGGCTTCAGTTATTCCAGTTACTTTCGTCGAAACAGACGACTATAGTTTCGCTGACATCAAAATAGGGTTTTACAATGGTGACCATGGAGACGGGGAGCCATTTGATGGGGTGCTCGGAGTGTTGGCCCATTCATTTTCCCCAGAGAGCGGGAGGCTCCACCTGGACTCGGCGGAGACATGGGCGGTGGATTTTCGGACGGAGAAATCTGAGGTAGCGGTGGATTTGGAGTCAGTGGCGACACATGAGATTGGACATCTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCAGTGATGTATCCCAGTTTGAAAGCAAGAGACAAGAGAGCTGATTTGAAGATAGATGACATAAAGGGGGTGCAAGCTTTATATGGATCAAATCCAAATTTTAGATTCGGGTCATCGTTAAAATCTGATATTTCCACTAACAATGGTGCAAGTTTAAGGGTGAAATCTTTGAGGTTGGCTGGTTTTGTTCTCTTTTCTTTCATTCATAGTTTATGTACGTGTATATAG 1062 0.4492 MFLLLIHSSTLLFTLLLFIPLPCIVSRPLTFSPVTKISLTNHNIQHLADAGKGSSVTGISEIKKYFSHFGYILQNNSTFSDVFDAEFESALNLYQQKLGLQVTGTLDSDTLSQITTPRCGVPDKINVHSFHSTKHYLYFPGKPRWARPMPMSLTYAFSREYMIRSLSLHEIREAFKRAFSRWASVIPVTFVETDDYSFADIKIGFYNGDHGDGEPFDGVLGVLAHSFSPESGRLHLDSAETWAVDFRTEKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLKARDKRADLKIDDIKGVQALYGSNPNFRFGSSLKSDISTNNGASLRVKSLRLAGFVLFSFIHSLCTCI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00887 353 Pfam Putative peptidoglycan binding domain 59 113 IPR002477 -
Bach6g00887 353 Gene3D Collagenase (Catalytic Domain) 51 312 IPR024079 GO:0008237
Bach6g00887 353 PRINTS Matrixin signature 114 127 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bach6g00887 353 PRINTS Matrixin signature 175 190 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bach6g00887 353 PRINTS Matrixin signature 199 227 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bach6g00887 353 PRINTS Matrixin signature 260 285 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bach6g00887 353 PRINTS Matrixin signature 294 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bach6g00887 353 ProSitePatterns Matrixins cysteine switch. 117 124 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bach6g00887 353 SMART col_5 141 308 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bach6g00887 353 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 137 310 - -
Bach6g00887 353 FunFam Metalloendoproteinase 1 49 312 - -
Bach6g00887 353 SUPERFAMILY PGBD-like 51 123 IPR036365 -
Bach6g00887 353 PANTHER MATRIX METALLOPROTEINASE 43 308 - -
Bach6g00887 353 Pfam Matrixin 152 307 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bach6g00887 353 CDD ZnMc_MMP 153 307 IPR033739 GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00887 Bach-Chr6 6940303 6941364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00887 - K07999 qsa:O6P43_027003 453.366