Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00589 ATGGATAATCTGGCTCCAATTCATCATCTTAATCCTTGTTCTATTCAGATGTCACAAGCCCAGAAGCCACCCAGAAGTCAATCACCCACTTCGATTCCTCTTGGAATGCTAGGTACCGGACTCGTTACTTCTTCGCCCTTTTCATTACTCAAACCTCCTTCAACCATTCAATTTTTGGATAATATGGGTGAGACGAGATCTTTGAACTCAGTCAGGGAATTGCATGCCAAGATGCTCAAAATGCCAAAAAAAGGGAACTTGGATACCTTGGACAAAAGCATGATCAGGTACTACTTGGAATTTGGGGATTTCAAGTCCGCAACAAGAGTATTCTTTGCTGGTTTTGCAAGGAATTATCTTCTCTGGAATTCGTTTCTTGAGGAATTTTGGAGTTTTGGAGGTGACCCACATGAGATTCTGGAGGTCTTCAAGGAATTGCATCGGATTGGATTGCAGTTCAATAGTAGTGCTCTGACTATTGCTCTGAAATTTTGCTCAATTTTAATGGACTTATGGCTTGGGTTGGAAATTCATGCTTGTATGATCAAGAGAGGCTTCGATTTCGATGTGCATTTGAATTGTGCCTTAATCATTTTTTATGGCAAATGCTGGGATCTAGATAGAGCAAACCAGGTGTTTGATGAGACGCCACACCAAGAAAATTTCTTGTGGAATACAATTACTATAGTGAATTTGAGAAGTGAGAGGTGGGTGCACGCTTTAGAGCTGTTCCATAAAATGCAGCTATCTTCTGCCAAAGCCACTGCTGCTACCATTGTGAAGTTACTGCAAGCTTGTGGAAAATTGAGAGCTCTTAATGAAGGGAAGCAGATTCATGGGTATGTTTTAAGATGTGCACTTGAATCAAATTTGTCAATTTGCAATGCCATAATTAGCATGTACTCTAGAAATAGTAAGCTCAAACTAGCTAAAGCAGTTTTTGATTCAATGGAAGATCATGATTTATCTTCATGGAACTCAATCATTTCGAGTTATGCAGTGGCTGGTTATTTGAATGATTGCTGGAATCTCTTCCAAGAAATGAAGTCTTCCAATGTTAAACCCGACATTATAACTTGGAATACTCTTATTTCTGGCCATCTTCTTCATAACTCTTATGAAACAGTCCTTACCATTTTCCAGAGACTGCAAAGTGCAGGCTTCAGGCCAAACTCCTGCTCGGTAACCAGTGCTCTACAAGCAATTTTTGAGTTGGGTTTCTTTAAACTGGGGAAAGTAATCCATGGTTACGTTATAAGAAATAATCTTGACAATGATGTCTATGTGAGTACTTCATTGGTAGACATGTATGTCAAGAATGATTGCTTAGAAAAAGCTCAAGCTGTATTTGACAATGTAAAAAACAAAAATATTTGTACATGGAACTCGTTGATATCAGGGCATTGCATCAAGGGCTTATTTGATGACGCTGAAGCATTAGTGATACAGATGGAGAAGGTAGGGATAAAACCTGATTTGGTGACATGTAATGGTTTGGTTTCAGGGTATTCAATGCAGGGGCGTTATGAAGATGCTTTGGCTGTGATCCATCGCATAAGGAGTGCAGGATTAACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGTGCTTCACAGAATGAAAACTATAGGGATGCGCTCAAGTTTTTCATCCTAATGCAAGAAGAAGATGTCAAACCCAACGCTACGACCATTTGCAGCTTGCTTCGTGCCTGTGCTGGCCTATCATTGTTGAAGAAAGGAGAAGAGATACACTGCCTCAGTTTAAGACTTGGTTTTGTGGATGATATATACATAGCCACAGCCCTTATTGACATGTACAGTAAGGGGGGTAAACTAAAAGTAGCTCATGAGGTTTTCAGGAAAATTCAGACAAAAACACTACCTTGTTGGAACTGCATGATGATGGGATATGCCATTTATGGCCATGGAGAAGAGGTAATGAATCTTTTTGATGAAATGTGTGAAACTGGTATCAAACCTGATGCTATAACCTTCACTGCTCTTCTCTCTGGCTTCAAGAATTCAGGGTTAGTTAAGGAAGGATGGAAGTATTTCGACAGCATGAAGAGAGATTATAACATAATTCCAACCATTGAGCACTACTCTTGCATGGTAGACCTTCTTGGAAAGGCTGGTTTTCTTGATGAAGCATGGGATTTCGTACACACAATGCCAATAAAGCCAGACGCTAGCATTTGGGGTGCCATTCTTGCATCCTGCCGTGTTCACAAAAACAGTAAACTGGCAGAGATTGCTGCGAAGAATCTTTTCAATCTGGAACCATATAATTCTGCTAATTATGTGTTGTTGATGAACTTATATTCCAGTTTAAATAGATGGGAGGATGTGGAGCGTATTCAAGATTTGATGATTAACCAGGGAGTGAAAAGCCCGCAGGTCTGGAGCTGGATACAAGTTAATGAGGGCATTGGTGTTTTCTCCACAGAAGGGAAACCACATCCAGAAGAGGGGGAGATATACTTTGAGTTATATCAATTAGTTTCTGAAATAAGAAAGCTGGGTTATGTACCTGATATCAGTTGTGTATATCAGAACATTGATGACAGTGAAAAGGAGAAGGTTCTTCTCAGTCATACCGAGAAATTGGCCATGACATATGGACTTATGAAGACTAAATCTGGAGCACCTGTTAGGGTAGTCAAGAATACAAGGATTTGTCAAGATTGTCATTCAGCAGCTAAGTACATTTCTTTGGCTCGTAGTCGTGAGATTTTCCTCAGAGATGGTGCGCGTTTTCACCATTTTATAAATGGAAAATGCTCCTGTAATGATCGTTGGTGA 2808 0.4006 MDNLAPIHHLNPCSIQMSQAQKPPRSQSPTSIPLGMLGTGLVTSSPFSLLKPPSTIQFLDNMGETRSLNSVRELHAKMLKMPKKGNLDTLDKSMIRYYLEFGDFKSATRVFFAGFARNYLLWNSFLEEFWSFGGDPHEILEVFKELHRIGLQFNSSALTIALKFCSILMDLWLGLEIHACMIKRGFDFDVHLNCALIIFYGKCWDLDRANQVFDETPHQENFLWNTITIVNLRSERWVHALELFHKMQLSSAKATAATIVKLLQACGKLRALNEGKQIHGYVLRCALESNLSICNAIISMYSRNSKLKLAKAVFDSMEDHDLSSWNSIISSYAVAGYLNDCWNLFQEMKSSNVKPDIITWNTLISGHLLHNSYETVLTIFQRLQSAGFRPNSCSVTSALQAIFELGFFKLGKVIHGYVIRNNLDNDVYVSTSLVDMYVKNDCLEKAQAVFDNVKNKNICTWNSLISGHCIKGLFDDAEALVIQMEKVGIKPDLVTCNGLVSGYSMQGRYEDALAVIHRIRSAGLTPNVVSWTAMISGASQNENYRDALKFFILMQEEDVKPNATTICSLLRACAGLSLLKKGEEIHCLSLRLGFVDDIYIATALIDMYSKGGKLKVAHEVFRKIQTKTLPCWNCMMMGYAIYGHGEEVMNLFDEMCETGIKPDAITFTALLSGFKNSGLVKEGWKYFDSMKRDYNIIPTIEHYSCMVDLLGKAGFLDEAWDFVHTMPIKPDASIWGAILASCRVHKNSKLAEIAAKNLFNLEPYNSANYVLLMNLYSSLNRWEDVERIQDLMINQGVKSPQVWSWIQVNEGIGVFSTEGKPHPEEGEIYFELYQLVSEIRKLGYVPDISCVYQNIDDSEKEKVLLSHTEKLAMTYGLMKTKSGAPVRVVKNTRICQDCHSAAKYISLARSREIFLRDGARFHHFINGKCSCNDRW 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00589 935 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 599 825 - -
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 232 405 IPR011990 GO:0005515
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 131 231 IPR011990 GO:0005515
Bach6g00589 935 Pfam DYW family of nucleic acid deaminases 843 935 IPR032867 GO:0008270
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 521 585 IPR011990 GO:0005515
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Bach6g00589 935 Pfam E motif 745 807 IPR046848 -
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 586 678 IPR011990 GO:0005515
Bach6g00589 935 FunFam Pentatricopeptide repeat-containing protein 523 586 - -
Bach6g00589 935 Pfam PPR repeat 602 626 IPR002885 -
Bach6g00589 935 Pfam PPR repeat 293 320 IPR002885 -
Bach6g00589 935 Pfam PPR repeat 702 726 IPR002885 -
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 406 520 IPR011990 GO:0005515
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Bach6g00589 935 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 358 872 IPR046960 GO:0003723|GO:0009451
Bach6g00589 935 Pfam PPR repeat family 321 359 IPR002885 -
Bach6g00589 935 Pfam PPR repeat family 456 503 IPR002885 -
Bach6g00589 935 Pfam PPR repeat family 631 674 IPR002885 -
Bach6g00589 935 Pfam PPR repeat family 526 574 IPR002885 -
Bach6g00589 935 Gene3D Tetratricopeptide repeat domain 679 812 IPR011990 GO:0005515
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Bach6g00589 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 663 693 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 665 699 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 459 492 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 529 563 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 494 528 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 631 664 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 324 357 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 293 322 IPR002885 -
Bach6g00589 935 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00589 Bach-Chr6 4321728 4324535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00589 133 935 Glycoside Hydrolase AT3G49170 29.894 2.81e-128 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00589 - - gmx:100796795 1427.15