Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach6g00255 | GTAAAATCTAAGACGAGGCCCTTCAATGCAAAATTGTGACCTTGCTGCTTCAACCGCCTTTGTTAATGGTGCTGCTGGTCAGAGCATCCTCATCTTTCTCTCTCAAACCCTACCATGCACAGAGAAAGGCAAGCAACTTCATCATCATCGTCAACAGGGGCAACGAATAGCAGTGGTCTCCCACCACCACCACCACCAAATGCTTGGCTTGATACTTGCCACAAATTGCTGCCTCACTGGGAATCTTTTTCCCTTTCTCATCAGTCATCTATCCCAATTTCTATATCAAGAGTCAACCAAGTTGATGCAGCAAGATTGGATGTTGAAATGTCAGCCATGTTGAAAGAACAATTGGTTAAAGTATTCTCTTTAATGAAGCCAGGAATGTTATTCCAGTATGAAGCTGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGATTCTCAATCTGGGTAGATAAGCCAACTCCAGGCATTGCTCTCATGAACCTGAGGTATAGGAATGAGTTTGCAATGGAATCAAGAGAAAAAGTCAGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGATTTGGTACTGTGTTGCTACTGTTGGTGGTCAGTATATCTGGGCCCGTTTACAATCCTTCTCTGCTTTTCGTAGATGGGTGAGCTTTAATTTGGCTGTGTTTTTCATTCGGAGGTCATTGGCACGACGAGCATGGATCTTGATACAACGTATAGAAGGAATTTATAGAGCTGCTTCATTTGGCAATCTGTTGATATTTCTTTGCACAGGAAGGTATAGAAATCTTATCGAAAGAGCTTTACATGCTAGGCTTGTCTATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACCGGCAGTTAGTTTGGAATGAATTCTCGGAAATGTTGTTGTTACTTCTTCCTCTCCTTAACTCATCGTCTGTAAGAAATCTCTTTCGACCATTTTCTAAGGATAAATCCTCCAGTTCTGCTAGGGATGACACTGCTTGCCCAATTTGCCTGGCGACTCCAACCATTCCATTTGTTGCTCTCCCTTGTGAGCACAGATACTGTTACTACTGTCTTCGAACACGATGTGCTGCTGTTCCATCGTTTAGATGTTCCAGGTGCAGTGAGCCTGTGGTTGCCATGCAGCGGCACAGCGGTGTCACCAAGGAATGATCTTTACAAGGGCAAAGAGTGGAATAATCTTTGGAAACATATGATCTAGTTAGGGAATTAGGGATATAAAATACTTGATGGAATCAACGGTATCCTTTTTCTTGAGGGGGAGGGCCCTCCTATAACATTCATATTTGTTTGAAAAGGAATTAATTTCTTTCTTCTATTCCCCCCATTGAATATGGGTGTATTCTTTCTCCCGTTTAGCAATAAATAGCTCAG | 1410 | 0.427 | MHRERQATSSSSSTGATNSSGLPPPPPPNAWLDTCHKLLPHWESFSLSHQSSIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRNEFAMESREKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWVSFNLAVFFIRRSLARRAWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALHARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVRNLFRPFSKDKSSSSARDDTACPICLATPTIPFVALPCEHRYCYYCLRTRCAAVPSFRCSRCSEPVVAMQRHSGVTKE | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach6g00255 | 357 | Pfam | Zinc finger, C3HC4 type (RING finger) | 301 | 341 | IPR018957 | GO:0046872 | |
| Bach6g00255 | 357 | ProSitePatterns | Zinc finger RING-type signature. | 317 | 326 | IPR017907 | - | |
| Bach6g00255 | 357 | CDD | RING-HC_PEX2 | 298 | 345 | IPR045859 | - | |
| Bach6g00255 | 357 | PANTHER | PEROXISOME BIOGENESIS FACTOR 2 | 19 | 356 | IPR025654 | GO:0005778|GO:0007031|GO:0008270|GO:0016558 | |
| Bach6g00255 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 357 | IPR013083 | - | |
| Bach6g00255 | 357 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Bach6g00255 | 357 | SUPERFAMILY | RING/U-box | 294 | 347 | - | - | |
| Bach6g00255 | 357 | SMART | ring_2 | 301 | 341 | IPR001841 | - | |
| Bach6g00255 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 301 | 342 | IPR001841 | - | |
| Bach6g00255 | 357 | Pfam | Pex2 / Pex12 amino terminal region | 69 | 280 | IPR006845 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach6g00255 | Bach-Chr6 | 1738517 | 1742636 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach6g00255 | K06664 | - | qsa:O6P43_018180 | 563.533 |