Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00854 ATGTCGCTTCTTGCTCCTCCTTCAGTAGCCACTCCACATTACCTTTCGCACAAGCATGTATTCTCAGATGATAACCACAAGCACAACAGCTGCTCAGGCACTTCTCTTTCTCCCCAGTATCCACTTCAAGTTCAGCTTCAGCAACCCGTACGCAGCCCCGTGCAAACACCGCGCCTCCAAAACGTTGTTGATGACAGTACCGAGATTTCGTCACAAGCTATCGAGTTCAAACCTCAAAATACAGATTTTCCTTGCACCAATAGGATGAAGAAGAAGGGTAAAGGGGTTAATCCTCCCCGTTGCACAACCTCTGATATTTTGCGTTTGATGGATGGTTTGGGCTTTCGCATACCTATTGATATCTACACCTCTCTAATAGAAGAGTGCACCATTTCGCGGGACCCCAAAAGAGCCATTGAATTGCATACCCATATCGCCCAGACCGTTACTGAACCTCCGTTATCGTTGCTGAACAGGCTCCTTGTAATGTATGTATCATGCGGTTTGTTGGATGAAGCCTGCCATATGTTCGACTCAATGTCTGTGAGGGACTTCAACTCGTGGGCAACTCTAATTATTGCTTATTTTGATGATGCTAAGTATGACGAAGCTATAAGTTTGTTTGTCAGTATGCTAAACCGAATTGATACCTTGGAATTACCTACATGGATCATGGTCTGCCTTCTCAAGGCAAGTTCCCATAGTATGAATTTTGAGCTGGGGAAGCAAGTTCATGGATGGTTATTTAAATTGAGCATTTTTGATGATATACTTCTTACTAGCTCCTTAATAAGCTTTTATGGGAAATTTAAGTGCTTGGAAGATGCAAACGTTGCTTTTAATCAAGTGTCAAGACATAACACAATGACTTGGACGGCTAAGATCATCAACAGTTGTAAGGAAAAGCATTTCTCTGAGGTTCTTAGTGACTTCAAGGAGATGGGAAGGCTAGGGATAAAGAAGAACAGCTTCACATTTTCCAGTGTACTCAAGGCGTGTGGAAGGATGCTGGATCATGGACGCTCTGGTCAACAGGTCCATGCTGAGGCCATCAAACGTGGGCTTGTCTCAGACACTTACATGCGATGTGGTTTGATAGACATGTATGGAAGAAGCGGATTGCTGAGAGAAGCAAAACAAGTGTTTGAGATGACCCAAAATGACACAAACATAGCTTGTTGGAATGCCATGCTTATGGGTTTTATACAACATGGCTTATACATTGAGGCTATTAAGTTTCTGTATCGGATGAAGGCAGCTGGAATGCAGCCCCAAGAGTCACTGCTTAATGAAGTAAGAATTGCTTGCGGGAGTGTCATTTACTAA 1326 0.4336 MSLLAPPSVATPHYLSHKHVFSDDNHKHNSCSGTSLSPQYPLQVQLQQPVRSPVQTPRLQNVVDDSTEISSQAIEFKPQNTDFPCTNRMKKKGKGVNPPRCTTSDILRLMDGLGFRIPIDIYTSLIEECTISRDPKRAIELHTHIAQTVTEPPLSLLNRLLVMYVSCGLLDEACHMFDSMSVRDFNSWATLIIAYFDDAKYDEAISLFVSMLNRIDTLELPTWIMVCLLKASSHSMNFELGKQVHGWLFKLSIFDDILLTSSLISFYGKFKCLEDANVAFNQVSRHNTMTWTAKIINSCKEKHFSEVLSDFKEMGRLGIKKNSFTFSSVLKACGRMLDHGRSGQQVHAEAIKRGLVSDTYMRCGLIDMYGRSGLLREAKQVFEMTQNDTNIACWNAMLMGFIQHGLYIEAIKFLYRMKAAGMQPQESLLNEVRIACGSVIY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00854 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Bach4g00854 441 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 437 IPR046960 GO:0003723|GO:0009451
Bach4g00854 441 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 342 441 - -
Bach4g00854 441 Pfam PPR repeat 158 183 IPR002885 -
Bach4g00854 441 Pfam PPR repeat 365 384 IPR002885 -
Bach4g00854 441 Pfam PPR repeat 187 213 IPR002885 -
Bach4g00854 441 Pfam PPR repeat 393 421 IPR002885 -
Bach4g00854 441 NCBIfam pentatricopeptide repeat 393 424 IPR002885 -
Bach4g00854 441 Gene3D Tetratricopeptide repeat domain 102 251 IPR011990 GO:0005515
Bach4g00854 441 Gene3D Tetratricopeptide repeat domain 290 439 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00854 Bach-Chr4 5702652 5703977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00854 107 439 Glycoside Hydrolase AT3G49170 29.191 4.55e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00854 - - qsa:O6P43_025009 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00854 4 5702652 5703977 Bach4g00854 4 5702652 5703977 ECH