Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00696 ATGGCGTCGTCACTGTCGTCCCTCTCCTCCATCATCTACCAACCTCACAGTGCTCTACGCCTTAAACTTCATAGTCGATGTTGCTTCAGCTTTAGAATCTTGTGCCAGAAGCATGAAGGTTCTTTTTCACGCAGCTATGGCAATGCAGCGTCTAGTTCATTGCCGTGGGCCCGAAGGGATTTTACTCTTAAACTCACCAGAAACTTCTCTCAGTCGAACGTTCCTCTCCCCAATAAGTCAGAGGGTCCTAGTCTCCGCCACTTCATTGCTCAAGCTATTCTCGCTACTTCCGAAACTCAACCCGATATTGTGTCAGATACTGAAGTTCCTTTGAAAGGTCGTATATATCATGAGACTTATGGATGCCAAATGAACGTTAACGATATGGAGATTGTTCTATCTATAATGAAAAATGCTGGGTATCGTGAAGTGGTGGATGTTCCTGAAAGTGCAGAGATTATATTCATAAATACTTGTGCCATCAGGGACAATGCAGAACAAAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAAAGGCAATGGAAGAGTAATGTTGCAACTGGGAGGTCACAATCCTTACGTCCTCCAAAAGTAGTCGTGTTGGGATGCATGGCTGAGAGGTTAAAGGAGAAGATATTGGATGCTGATAAAATGGTTGATGTGGTCTGCGGACCAGATGCTTACAGAGATTTGCCGCGATTGCTTGAAGAGGTAGACTATGGTCAGAAAGGGATAAATACTCTTCTTTCACTTGAAGAGACTTATGCTGATATTAATCCCGTCCGAATCTCCAAAAACTCAGTTACTGCTTTTGTCTCAGTGATGAGGGGTTGCAATAACATGTGCTCATTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCACGCCCTGTGGAATCCATAGTGAGAGAGGTGGCAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACACTTCTTGGCCAGAATGTGAACAGCTACAATGATACATCTAGGACTGAAAGCGAAGTTGAACAGGGATCCAACTGGAGTTACAGTGATGGCTTCTCTAGCATGAGTAAAGTCAAAAATATGGGCTTAAGGTTTTCTGATCTTTTGGATAGACTCTCCTCAGAATTTCCTGAGATGCGGTTCAGATTCACATCTCCCCACCCTAAAGATTTTCCAGATGAACTACTTTATATCATGCGAGAAAGACATAATATATGCAATTTCATACATTTACCTGCTCAAACAGGAAGTAGCACCGTGCTTGAGAGAATGAGACGGGGATATACTCGAGAGGTCTATTTGGATCTTGTGCAAAAGATACGGAGTATAATTCCAGATGTGAGCTTAAGCAGTGATTTCATTTGTGGTTTCTGTGGAGAAACAGAGGAGGATCACTTAGACACCCTGAGTCTTGTAAAGGCCGTTGGTTATGATATGGCATATATGTTTGCTTATAGCATGAGGGAGAAAACCCATGCCCACAGAAATTATGTTGATGATGTTCTTGAGGAAGTGAAACAGAGGAGGCTTACTCAACTTATTGAGGCTTTCCGTGAGAGCACAGGTCAATGTTACGACTCCCAAGTTGGAACTATACAGCTTGTATTAGTTGAAGGACATAACAGGAGAGCTCCGGATACTGAACTTATGGGCAAGAGTGACAAGGGACATCGAGTGTCATTTGTTAATGTTCCAATCCCTCGCAGAGAAGATGCCAACATTAAGCGACATCCTGTTGTTGGTGATTTTGTTGAAGTCCGCATATCAAGATCTTCAAGAGCATCACTCTTCGGCGAGGCACTTGCTATAACTAAATTAACTTCATTCTACAAAAATATGAACGAAGAAGCTGTTGCTTGCAGCGCATAAAACTTGCAGCATAAGCATCGAGATACGAGGCATCATCTTATCTGAGAGGAGCAAAGTGGGATCGACTCTGCCTTTCATCTGGATCAAAAAATTTAAGCTATTCTAATCTAATCTGTCCATGGAAAATGCGCGCGACTTTCAAAATTAACCATCGACAGTGTCACAAATTAAATTTCCCCTGGTGGATTCGCCAGGTATATTTAAGATTGTTTGTTTCCATGCCAACAAGGTTCTTA 2102 0.4234 MASSLSSLSSIIYQPHSALRLKLHSRCCFSFRILCQKHEGSFSRSYGNAASSSLPWARRDFTLKLTRNFSQSNVPLPNKSEGPSLRHFIAQAILATSETQPDIVSDTEVPLKGRIYHETYGCQMNVNDMEIVLSIMKNAGYREVVDVPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRQWKSNVATGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDTSRTESEVEQGSNWSYSDGFSSMSKVKNMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYIMRERHNICNFIHLPAQTGSSTVLERMRRGYTREVYLDLVQKIRSIIPDVSLSSDFICGFCGETEEDHLDTLSLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVLEEVKQRRLTQLIEAFRESTGQCYDSQVGTIQLVLVEGHNRRAPDTELMGKSDKGHRVSFVNVPIPRREDANIKRHPVVGDFVEVRISRSSRASLFGEALAITKLTSFYKNMNEEAVACSA 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00696 621 SMART MiaB 270 511 IPR006638 GO:0003824|GO:0051536
Bach4g00696 621 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 114 596 IPR005839 GO:0006400|GO:0016740|GO:0051539
Bach4g00696 621 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 113 242 IPR013848 GO:0035596|GO:0051539
Bach4g00696 621 SFLD Radical SAM 112 605 IPR007197 GO:0003824|GO:0051536
Bach4g00696 621 SUPERFAMILY Radical SAM enzymes 264 518 - -
Bach4g00696 621 ProSiteProfiles Radical SAM core domain profile. 266 522 IPR007197 GO:0003824|GO:0051536
Bach4g00696 621 CDD Radical_SAM 278 497 - -
Bach4g00696 621 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 62 614 - -
Bach4g00696 621 ProSiteProfiles TRAM domain profile. 525 601 IPR002792 -
Bach4g00696 621 FunFam CDK5 regulatory subunit-associated protein 1 113 256 - -
Bach4g00696 621 SFLD B12-binding domain containing 196 494 - -
Bach4g00696 621 ProSitePatterns Methylthiotransferase radical SAM domain signature. 274 294 IPR020612 GO:0051539
Bach4g00696 621 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 115 598 - -
Bach4g00696 621 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 113 601 IPR006463 GO:0006400|GO:0016740|GO:0051539
Bach4g00696 621 Gene3D - 114 256 IPR038135 -
Bach4g00696 621 Pfam Radical SAM superfamily 274 471 IPR007197 GO:0003824|GO:0051536
Bach4g00696 621 FunFam CDK5 regulatory subunit-associated protein 1 268 527 - -
Bach4g00696 621 Pfam Uncharacterized protein family UPF0004 114 226 IPR013848 GO:0035596|GO:0051539
Bach4g00696 621 Pfam TRAM domain 525 600 IPR002792 -
Bach4g00696 621 SFLD CDK5RAP1 112 605 - -
Bach4g00696 621 Gene3D tm_1862 like domain 268 526 IPR023404 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00696 - - lja:Lj2g3v1728760.1 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00696 4 4614144 4617473 Bach4g00696 4 4614144 4617473 ECH