LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach4g00023	TAGCCCTTCTCCTCATCCATTTTTGTAGACATCGATTGAAACCCTAGCCGTCATTTGCGATGGCAATCGCATCTCCATCAACCCCAACCTTCTCACCTTCCTTGGGCTGCACACGAACAAAAGTGAGTCGCCTCCCACGGTCTCCCGAATTCCTCTTAACTCAGTCGCGGAGAAATCGAACTCGTCGGCTGGTCGTATCGTCGCGTCTCAATTCTTCTAAATCCTCCGATGCTGGTGGCTCTGTCTCGCCGGACAACGGAGATGTCTCGTTCCCCTACGAGCTCCAGCACGATTTTTCGCCTCAGCGTCGGAGGAGTGGATTGCCCGTGTTCGTCACTCTTCCAGTGGATGCCTTGGACCCAGAGGGACGGGTCCGGAAGCCCAGAGCTATGAAACATTCGCTCAATGCGCTCGCAAAGGCTGGAGTAGAAGGCGTCGTGATAGAGATTTGGTGGGGTTTAGTTGAGAGGAATGAGCCTAGGGTTTATAATTGGCAAGGGTATTGGGAACTCGTTATGCTGGCCTGGAATTGCGGCCTCAAGGTTCGAGTTGCACTTGCGTTTCATCAGTGCGGCACAGACCCCGGTGATCCTAATTGGATTCCCCTCCCTCTATGGGTGCTTGATGAGATAAAGAAGAATCCAGAATTAACCTATTCCGACAGATCTGGGAGAAGAAGTTTTGAATACATTTCCCTTGGATGTGATGTCCTTCCTGTACTATGTGGACGATCTCCCATTCAAGCATATGCGGATTTTATGAGGGACTTCAGGAACGCCTTCAGGTCTTACCTTGGTGTTATCATAACAGGAGTACAAGTTGGTATGGGTCCTGGTGGTGAACTAAGATATCCTTCATGCCCTCCTTCTCAGAAGCTACAATGGTCTTGGCCCCATGAACCTGGTGAATTTCAGTGCTATGATAAGTATATGATTGCATCTTTAAATGCTTGCGCAAGGGAGATGGGAATGCGTGAATGGGGAAATGGCAGTCAAATTGATGCCGGAAATTTGATGCAGAATCCTGAGTTGACTCAGTCTTTTAGAAGTGAGGTTGGTTCTTGGAATGCACCGTATGGTAACTTCTTTCTTGAATGGTACTCGAGGATGCTGTTGCTGCATGGAGAAAGAATTTGTAGGGAAGCTGACACCATATTTAGGGGTACAGAAGTCAATATATCAACAAAAGTTGCTACCTTTAACTGGCACTACAACACACAATCCCATCCATCTGAGTTAACAGCGGGCTGTTACGATACTTTATACCGGGATGTATACTTACCCATTGCTCGCATGTTTAGTAAGTATGGATTCACTATGTGCTGCTCATATTTTGAAATGCAAGACCCGGTACTCAATAAGATAACCACAGGCAGTAAGCCCGAGGGTTTGTTTAGACAGATTTTGCTGGCTGCGAGGCTTTGTGACATACCGCTGGATGGCGAAAATTTTTCAAGTAATTTGGATGATAAAGCATTCGACCAGGTGCTAAAGATGTCAAAGTTGTACTCGGATGGGATTGAAAAACGCCCCTTCTCATTCAACTTTGTGAGAATGGACAGAAATTTATTTGAACCCCGTTATTGGAATCGGTTTACTCGTTTTGTGAAGCAAATGGCCGATGGGAATATTTTTCGAGCCAGATTAAATTCTGCAAGTAACGTGCGGTTGAAGGCCACATTAGGAGCTGCAGAAGTTGGACTGTCCTACCAGCCAGCTTAAATAGGTTCCACCCTATGGTCTTAGGCAAATTTTAGTATTATTCACCAATATTGTATGCAAATGGTCTAATGACCTCTGATCATGTGTTGTGAAATTTGTAGTTGCTGCTGATTCTCCGCATGATTCTTTTATTTCTTCTTCGCAAATAGTTGATAGAATGTACCATATTACATTGCCTCCCTGCTTTTTTAGAATGGGTGGCATCATACGTACTTCTATCCGTATTTCAAATACTGAGATAAATA	1966	0.4527	MAIASPSTPTFSPSLGCTRTKVSRLPRSPEFLLTQSRRNRTRRLVVSSRLNSSKSSDAGGSVSPDNGDVSFPYELQHDFSPQRRRSGLPVFVTLPVDALDPEGRVRKPRAMKHSLNALAKAGVEGVVIEIWWGLVERNEPRVYNWQGYWELVMLAWNCGLKVRVALAFHQCGTDPGDPNWIPLPLWVLDEIKKNPELTYSDRSGRRSFEYISLGCDVLPVLCGRSPIQAYADFMRDFRNAFRSYLGVIITGVQVGMGPGGELRYPSCPPSQKLQWSWPHEPGEFQCYDKYMIASLNACAREMGMREWGNGSQIDAGNLMQNPELTQSFRSEVGSWNAPYGNFFLEWYSRMLLLHGERICREADTIFRGTEVNISTKVATFNWHYNTQSHPSELTAGCYDTLYRDVYLPIARMFSKYGFTMCCSYFEMQDPVLNKITTGSKPEGLFRQILLAARLCDIPLDGENFSSNLDDKAFDQVLKMSKLYSDGIEKRPFSFNFVRMDRNLFEPRYWNRFTRFVKQMADGNIFRARLNSASNVRLKATLGAAEVGLSYQPA	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach4g00023	553	MobiDBLite	consensus disorder prediction	1	21	-	-
	Bach4g00023	553	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	39	526	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	165	186	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	406	429	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	122	136	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	444	466	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	388	399	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	335	354	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	371	387	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	143	161	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	257	279	IPR001554	GO:0000272\|GO:0016161
	Bach4g00023	553	Gene3D	Glycosidases	80	546	-	-
	Bach4g00023	553	MobiDBLite	consensus disorder prediction	43	63	-	-
	Bach4g00023	553	SUPERFAMILY	(Trans)glycosidases	86	530	IPR017853	-
	Bach4g00023	553	MobiDBLite	consensus disorder prediction	43	67	-	-
	Bach4g00023	553	Pfam	Glycosyl hydrolase family 14	94	515	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach4g00023	Bach-Chr4	204823	207810	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach4g00023	83	526	Glycoside Hydrolase	AT4G17090	48.989	2.53e-146	431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach4g00023	K01177		-	gmx:100805981	762.681

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach4g00023	4	204823	207810	Bach4g00023	4	204823	207810	ECH