Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00242 CTCTTCTCTCCTCCACTCCCTAACCAAATCTCCCTCTCTCTCTCTCTCTCTCTGACTTTCTTTCAGGGTGATTTGCAATGACTGAACCTTCTAAGGTCATTCATGTTCGAAATGTTGGGCATGAAATATCCGAAAATGATTTACTGCAGCTATTTCAACCTTTTGGAGTCATAACTAAACTTGTGATGCTGCGTGCAAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAGTTTTATGGAAATATCCAACCTAGCATAAGGGGAAGGAATGTGTATATCCAATTTTCTTCACATCAAGAACTAACAACGATGGATCAAAGTCAAGGACGAGGAGAAGAGCCAAATCGAATTCTCTTAGTTACAATTCATCATATGCTGTATCCTATAACAGTGGATGTGCTGCATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACGTTTCAGAAGTCTGCTGGCTTTCAGGCTCTGATTCAGTATCAATCACGTCAGAGTGCTGTTATAGCCAGAAGCACTCTTCAGGGACGCAATATCTATGATGGTTGCTGCCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAGGTCAACTACAATAACGACAGATCAAGGGATTTCACAAACCCAAATTTGCCTACAGAGCAGAAAGGCAGACCTTCACAACCTAATTATGGTGATGCAGGAGGCATGTATGGAGGTTCTGGAGCTAGGGCAGTTGGATTTCCACAGCTGGCCAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGAGGTTTGCCTCATGGAATAACGGGGACAAATGACAAATGTACAGTGCTTGTCTCAAATCTTAATCCTGATAGAATAGATGAGGATAAGCTCTTCAACTTGTTCTCTATTTATGGGAACATTGTGAGAATTAAACTTCTTCGAAACAAACCAGATCATGCACTTATCCAGATGGGAGATGGCTTCCAAGCTGAATTGGCAGTACACTTTTTGAAGGGAGCCATGCTGTTTGGGAAGCGATTAGAAGTAAACTTCTCAAAGCATCCAAACATAACCCAAGGCCCTGACACACACGAGTATGTGAATTCAAATCTCAATCGTTTTAATCGAAATGCTGCCAAGAACTACCGATATTGTTGCTCCCCGACAAAGATGATCCACTTGTCAACCCTCCCACAAGATGTCAGTGAAGAGGAGATTGTCACCCTTGTAGAGGAACACGGAACCATTGTCAATAGCAAGGTGTTTGAGATGAATGGGAAGAAGCAGGCACTGGTTCAGTTTGAGAGTGAAGAACAAGCTACTGAAGCCCTTGTGTGCAAGCATGCAACCTCACTTTCAGGCTCAATTATCAGGATCTCCTTTTCCCAGTTACAGACCATATAAGGGGTCCTATGAAAGGCAACTTGGGTAAGGGATGTCAAGCATATTTAGGGATAAGGATTCTGAATTTGGGAAGGATGTTTTTATGCAGATGATCGTCTTCATTGTCTTGTAATGGTCATTTTGCTTTCTATTTTACTGATAAGATCTGCTCTTTGACCTTTTCTCCTTTAATTATTTGTCTTCACGTCTCCCTTTGCCTCTCTGCTAGATCTTTAGGT 1621 0.4226 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVNALQFYGNIQPSIRGRNVYIQFSSHQELTTMDQSQGRGEEPNRILLVTIHHMLYPITVDVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVIARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPNYGDAGGMYGGSGARAVGFPQLANAAAIAAAFGGGLPHGITGTNDKCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGPDTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVSEEEIVTLVEEHGTIVNSKVFEMNGKKQALVQFESEEQATEALVCKHATSLSGSIIRISFSQLQTI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00242 441 Gene3D - 251 344 IPR012677 -
Bach1g00242 441 MobiDBLite consensus disorder prediction 186 205 - -
Bach1g00242 441 Gene3D - 345 440 IPR012677 -
Bach1g00242 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 438 IPR000504 GO:0003723
Bach1g00242 441 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 419 - -
Bach1g00242 441 CDD RRM2_PTBPH3 96 183 IPR034796 -
Bach1g00242 441 CDD RRM1_PTBPH3 6 80 IPR034795 -
Bach1g00242 441 MobiDBLite consensus disorder prediction 186 213 - -
Bach1g00242 441 CDD RRM4_PTBPH3 357 435 - -
Bach1g00242 441 CDD RRM3_PTBPH3 253 328 IPR034797 -
Bach1g00242 441 Gene3D - 99 201 IPR012677 -
Bach1g00242 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
Bach1g00242 441 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Bach1g00242 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 333 - -
Bach1g00242 441 Pfam RRM-like domain 94 174 IPR021790 -
Bach1g00242 441 SUPERFAMILY RNA-binding domain, RBD 252 436 IPR035979 GO:0003676
Bach1g00242 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Bach1g00242 441 SMART rrm1_1 365 434 IPR000504 GO:0003723
Bach1g00242 441 SMART rrm1_1 255 324 IPR000504 GO:0003723
Bach1g00242 441 SMART rrm1_1 101 170 IPR000504 GO:0003723
Bach1g00242 441 SMART rrm1_1 7 76 IPR000504 GO:0003723
Bach1g00242 441 Gene3D - 1 98 IPR012677 -
Bach1g00242 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 429 IPR000504 GO:0003723
Bach1g00242 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Bach1g00242 441 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g00242 Bach-Chr1 3056254 3063451 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g00242 K14948 - gmx:100819672 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach1g00242 1 3056254 3063451 Bach1g00242 1 3056254 3063451 ECH