Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00952 ATGGGAGTTGTGACTGCATCTAGCTCAGCTGCTCGGACTCCAATAGGATTGTCCACAAAATTTTCAAGTTATCGGTGTGCACCAATAAGACTCTTTATTGTAGCACTTAAAGGAGATAAACCCAACAATATAGCTTTGGTTACGCCTCCAGAGCTTCTACCCATTGAAACAGTGAAGCAGCGCCCGAAAAGAATACGAAAAAGCATTAAACTCTTTACAGATGAAGCTTCTTCACTCACGTTGGATGTGGATTACGATGAAGCTGCAGCCAACCTTGAAAATATATACAAACTGAGCCCTGCATCTGATACTCATAGTGCAGAATATAGAGATGGTTTAATCAAAAGAGTCTCACGAAGAAGGAGGAAGATTAGTGATGGTGATAAAGATGGGGAGTTAAATAGTGATTATGGTATAGTTAGAAGCCGGAATAAGAAGCCCAAGCGGTTGAGTCTTGATGAGAGGATTGCTTCAAAAAAGGACACAAAGGAGGAGGTGGTTGTTCCAACACAAAAGAAAAGAAATGTTAAGACTAGAATTGAGAAGATTGATGAGCTTGTCAAGGAATATTCTGCGTCAGCCGATTTAGTCAGTATGGATTGGAAAAAAATGAAGATACCACCAGTTCTTCCTTCTTCAGAGCACACCTGGTTGTTTAAATTGATGCAGCCTATGAAGGTACTCCTTCGAGTGAAAGAAGATCTACAGAAGGAGCTGGGGAGAGAACTTACAGAGGGTGAGCTAGCTGTTGCAACAGCCATCAGCATTGTTCAAGTAAAGAAAGCAGTAGAAGTTGGTCGAGCTGCAAGAAACAAGTTGATTAAGCACAATCTTCGGCTCGTCTTGTTTGTGACCAACAAATATTTTCAAGATTTTTCAAATGGCCCAAAGTTCCAAGACCTTTGTCAGGCAGGAGTTAAGGGACTTATCATTGCAATTGATCGGTTTGAGCCAAAGAGGAAATTTCGGCTCTCAACGTATGGATTGTTTTGGATAAGACATGCCATTGTTCGTTCCATGACCCTCTCCAGCTTCCTTCGCGTACCCTTTGGTCTTGAATCGGTTAGAGTAGATATTCAAAGAGCTAAGCTCAAGTTAACATTTGAACTTCAAAGAGTACCAACAGAGGAAGAGATAATAGAAAGAGTTGGGATCTCTCCTGAAAGATACCGTGAAGTAATGAAGGTCGCAAAGCCTGTTCTTTCCCTTCATTCAAGGCATGCAACCACACAAGAGGAGTTTATTGCTGGGATAACTGATGTTGACGGTGTTAATGGCGATAACAAGAGGCAACCTACTCTTCTTAGGCTGGCTCTTGATGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGGTATGGACTTGATGGTAAGGGTAACAGAACATTGGGAGAAATCGCTGGGAACTTGAATATTTCGAGGGAAATGGTAAGGAAGCATGAAGTCAAGGCTTTGTTGAAGCTCAAACATCCAGCTCGGATGGATTATCTTCGTCGTTATGTTGGATAA 1524 0.4199 MGVVTASSSAARTPIGLSTKFSSYRCAPIRLFIVALKGDKPNNIALVTPPELLPIETVKQRPKRIRKSIKLFTDEASSLTLDVDYDEAAANLENIYKLSPASDTHSAEYRDGLIKRVSRRRRKISDGDKDGELNSDYGIVRSRNKKPKRLSLDERIASKKDTKEEVVVPTQKKRNVKTRIEKIDELVKEYSASADLVSMDWKKMKIPPVLPSSEHTWLFKLMQPMKVLLRVKEDLQKELGRELTEGELAVATAISIVQVKKAVEVGRAARNKLIKHNLRLVLFVTNKYFQDFSNGPKFQDLCQAGVKGLIIAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLSSFLRVPFGLESVRVDIQRAKLKLTFELQRVPTEEEIIERVGISPERYREVMKVAKPVLSLHSRHATTQEEFIAGITDVDGVNGDNKRQPTLLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALLKLKHPARMDYLRRYVG 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00952 507 PRINTS Major sigma-70 factor signature 324 332 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 PRINTS Major sigma-70 factor signature 300 313 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 PRINTS Major sigma-70 factor signature 467 482 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 PRINTS Major sigma-70 factor signature 482 493 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 PRINTS Major sigma-70 factor signature 446 458 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 NCBIfam sigma-70 family RNA polymerase sigma factor 269 495 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 433 505 IPR013324 -
Bach12g00952 507 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 348 412 IPR013324 -
Bach12g00952 507 Pfam Sigma-70, region 4 442 495 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 Gene3D - 345 398 IPR036388 -
Bach12g00952 507 Gene3D - 55 344 - -
Bach12g00952 507 Pfam Sigma-70 region 2 273 339 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 81 506 - -
Bach12g00952 507 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 192 340 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 Pfam Sigma-70 region 3 357 423 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bach12g00952 507 Gene3D - 429 507 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00952 Bach-Chr12 6739864 6742844 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00952 K03093 - cave:132191612 706.057