LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach12g00875	GTTCATGCACTTGGTGTTTCCGTGCATGTTTATATTCACTAGAAGTAGACCACTGAGTCCAAATTGCGTTGCTAGATTATTGGTGGAGCAGTGCTTCATGACGGGTCCATCGCAGAGATGAAAACAGGGGAGGGAAAAACTTTAGTTTCCACATTAGCGGCGTATCTTAATGCCCTGACTGGTGAAGGCGTCCATGTTGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGAGGGATGAATGCTGAAGAGCGGAGATTCAACTATAAATGTGACATAACATATACCAATAATTCGGAGCTTGGCTTTGACTACTTACGAGATAATCTAGCTGGAAATAGCGGGCAGCTTGTGATGAGATGGCCGAAGCCATTTCATTTTGCAATTGTTGACGAAGTGGATTCTGTCCTCATAGATGAAGGAAGAAATCCTTTGCTAATAAGTGGTGAGGCTAGTAAAGATGCTGCGCGATATCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAGGTGGAGCTTAAAGATAATTCAGTGGAGTTGACTGAGGGAGGAATTGCTCTGGCTGAGATGGCTCTTGAAACGAATGATCTTTGGGATGAAAATGATCCTTGGGCGAGATTTGTAATAAATGCTTTAAAAGCAAAAGAATTCTATCGTCAAGATGTGCAGTACATGGTTAGAGATGGGAAGGCTCAAATTATTAATGAGCTGACAGGAAGAGTGGAAGAGAAAAGGAGATGGTCTGAAGGGATTCACCAAGCTGTAGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCAGTTGTTGTTGCACAAATCACATACCAGTCATTGTTCAAGCTTTATCCAAAGTTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAGATGTTTAAGATGCCAGTCATTGAAGTGCCAACAAATCTTCCAAATATTCGGAAAGATTTACCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCAAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTTTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACATTTGTCTGGTCTGCTGAAGGAATGGAATATCCCCCACAATGTCCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATAGTCGCACAGGCAGGGCGTAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGAGGCACAGATATAATCCTTGGCGGAAATCCAAAAATGCTGGCCAGAGAAATTATAGAGGATAGCCTACTTTCATTTTTGACACAAGAGGCTCCTAACGATGAACTTGCTGGTGAGACAACTTCACAAAAGGTGCTTCCGAAGATAAAGGTTGGATCATCATCAATGGCCTTACTTGCTAAGACAGCCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGCTGGACGTATCAGAAGGCTAAGACTTTTATCTCGAAGGCTGTGGAAATGAGTCAGTCATATAATTTGATTGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCAGTCTGTTTTGAAGGATTGTGAAGAACACTGTTTGCGTGAAGGGTCTGAGGTGAAAAAACTCGGGGGCCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTTCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAAGCTTATATCAAAGATTACAAATGATGAGGATATACCAATTGAGGGTGATGCCATTGTGAAACAGCTCTTGGCATTGCAAATCAATGCAGAAAAATACTTCTTCGGCATAAGAAAGAGCCTCGTTGAGTTTGATGAAGTATTGGAGGTACAAAGGAAGCATGTTTATGACCTTAGGCAGTTAATTCTAACGGGCGATGATGAAAGCTGTTCCCAGCATATATTTCAGTACATGCAAGCGGTGGTGGATGAAATTGTCTTAGGAAACATCAACCCGCTAAAGCATCCAGATAGTTGGGATTTGAGCAAGCTCTTGAAAGAGTTTATGACAATTGGTGGAAAGCTGTTGCATGGGATTACCAGTGACACCTTATCGAAATCAGTTGGGAAACTGCAAGATGTAAGTTCAATTGACATTGTCAACCTTTCCCTTCCAAATTTGCCAGCACCTCCAAATGCATTCAGGGGCATTCGTAGGAAGAACTCTTCATTAAGACGTTGGCTTTCAATATGCTCTGATGAGTTAACCAAGAATGGGAAGTATCAGACAACTATTAATCTTCTACGCAAGTACCTTGGAGATTTTCTTATTGCTTCATATTTAAATGTTGTTGAAGAATCTGGTTATGATGACAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTGTGAAAACTCTCGATTGTTTCTGGAGAGATCATCTCGTGAACATGAATAGGCTCAGCTCAGCGGTAAACATAAGGAGTTTTGGTCACAGAAATCCACTTGAAGAGTACAAAATTGATGGTTGTCGATTTTTTATCTCAATGCTGAGTGCAACTCGAAGGTTAACTGTAGAATCACTGCTGAGATATTGGACATCTCCAATGGAGTCCCAAGAACTATTTGTATGA	2781	0.4157	MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRFNYKCDITYTNNSELGFDYLRDNLAGNSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIQGIHYKVELKDNSVELTEGGIALAEMALETNDLWDENDPWARFVINALKAKEFYRQDVQYMVRDGKAQIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFKMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRQEVEYMFRQGRPVLVGTTSVENSEHLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTQEAPNDELAGETTSQKVLPKIKVGSSSMALLAKTALMAKYVSKSEGKSWTYQKAKTFISKAVEMSQSYNLIELEKLANEESEMYPLGPTVALAYQSVLKDCEEHCLREGSEVKKLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVKLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVLGNINPLKHPDSWDLSKLLKEFMTIGGKLLHGITSDTLSKSVGKLQDVSSIDIVNLSLPNLPAPPNAFRGIRRKNSSLRRWLSICSDELTKNGKYQTTINLLRKYLGDFLIASYLNVVEESGYDDRHVKEIERAVLVKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRYWTSPMESQELFV	887

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach12g00875	887	PRINTS	SecA protein signature	69	89	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	PRINTS	SecA protein signature	222	244	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	PRINTS	SecA protein signature	259	276	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	PRINTS	SecA protein signature	296	309	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	PRINTS	SecA protein signature	16	26	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	Gene3D	-	1	175	IPR027417	-
Bach12g00875	887	SMART	SecA_DEAD_2	1	285	IPR011115	GO:0005524\|GO:0016020\|GO:0017038
Bach12g00875	887	PANTHER	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	1	885	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	SUPERFAMILY	Helical scaffold and wing domains of SecA	610	704	IPR036266	-
Bach12g00875	887	ProSitePatterns	SecA family signature.	385	400	IPR020937	GO:0006605\|GO:0006886\|GO:0016020
Bach12g00875	887	ProSiteProfiles	SecA family profile.	1	606	IPR014018	-
Bach12g00875	887	Pfam	SecA preprotein cross-linking domain	137	241	IPR011130	GO:0016020\|GO:0017038
Bach12g00875	887	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	300	588	IPR027417	-
Bach12g00875	887	SMART	SecA_PP_bind_2	130	241	IPR011130	GO:0016020\|GO:0017038
Bach12g00875	887	FunFam	Protein translocase subunit SecA	746	875	-	-
Bach12g00875	887	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1	151	IPR014001	-
Bach12g00875	887	FunFam	Protein translocase subunit SecA	609	724	-	-
Bach12g00875	887	Pfam	SecA Wing and Scaffold domain	604	875	IPR011116	GO:0016020\|GO:0017038
Bach12g00875	887	Pfam	SecA DEAD-like domain	1	284	IPR011115	GO:0005524\|GO:0016020\|GO:0017038
Bach12g00875	887	CDD	SF2_C_secA	303	574	IPR044722	-
Bach12g00875	887	NCBIfam	preprotein translocase subunit SecA	1	700	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1	298	IPR027417	-
Bach12g00875	887	CDD	DEXDc_SecA	1	297	-	-
Bach12g00875	887	Gene3D	Helical scaffold and wing domains of SecA	609	729	-	-
Bach12g00875	887	Gene3D	Helical scaffold and wing domains of SecA	748	877	-	-
Bach12g00875	887	Gene3D	-	300	606	IPR027417	-
Bach12g00875	887	Gene3D	-	199	299	IPR027417	-
Bach12g00875	887	Hamap	Protein translocase subunit SecA [secA].	1	878	IPR000185	GO:0005524\|GO:0006605\|GO:0006886
Bach12g00875	887	SUPERFAMILY	Helical scaffold and wing domains of SecA	774	885	IPR036266	-
Bach12g00875	887	SUPERFAMILY	Pre-protein crosslinking domain of SecA	129	250	IPR036670	GO:0016020\|GO:0017038

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach12g00875	Bach-Chr12	6160299	6169568	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach12g00875	K03070		-	gmx:100793437	1599.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach12g00875	12	6160299	6169568	Bach12g00875	12	6160299	6169568	ECH