Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00873 ATGATTAAACTTTGTGACCCAAGAAGAACATTGTACTTTAAATGGACGACGTTTGCAAAAATGTACAGTGCAAGTGAATCTATGCAGGATATTTCGGATTTAACAAAAAAAGTGTGTAAGGTTATGATTTCTTGTCCTAAATTAGCACTTGATACTGCTCTTGATCAAACTGGGATTAGAGTTTCATCAGATTTAGTTGAAAATGTCCTTGAAAGATTTGAGAATGCTGGTATGTTGGCATATCGGTTCTTTGAATGGGCTGGGAAGCAAAGAAACTACTCACACAGCATTAGAGCCTACCATGCAATGATCGGATCCCTGGCAAAGATAAGGCAGTATCAGATCATGTGGGACCTTGTGAATGACATGAGGAAAAGGGGGATGCTAAATGTTGAGACCTTTTGTATTATAATGAGAAAGTACACTAGGGCTAAGAAGATAGATGAGGCACTATACACATTTAATGTCATGGAAAACTATGGCATACCTCCTAATCTTGCAGCATTCAATGGTTTGCTAAGCGCTTTATGCAAGTCCAAGAATGTAAGAAAGGCTCAAGAGATCTTTGATAGTATGAAGGATCAATTTGTTCCAGACTCGAAAACTTATAGCATATTAATTGAAGGATGGGGAAAGGATCCAAATCTGCCCAAAGCTAGACAGGTTTTCAGAGAAATGGTTGATGTGGGGTGCGACCCTGATATAGTTACATATGGCATAATGGTCGACATTCTTTGCAAAGCTGGAAGAGTTGATGAAGCGGTTGAGGTTGTTAAGGATATGGATGCTAACGGTTGCAGGCCAACATCTTTCATTTACAGTGTTCTGGTTCATACATATGGAGTAGAAAACCGGATTGAAGATGCTATTGGTAGCTTCCTGGAGATGGGAAGGAAGGGAATCAAGGCAGATGTAGTAGTCTATAATGCCTTGATTGGTGCTTTTTGTAAAGTAAATAGATTCAAGAATGTTGACAGGGTTTTAAATGACATGGAATGTAATGGTGTTGCTCGTAATTCAAGGACATATAATGTTATCATAAGCAGTTTAATTGGCCGAGGACAAACTGATGAGGCTTTTCGTGCCTTCCGCAGGATGATTAAGTCATGTCAACCAGATTCTGACACTTACACAATGATGATAAAAATGTTTTGTGAGAGAGATGAACTAGATATGGCTCTGAAAATTTGGAGTTATATGAGGAAAAAACGGTTTGTCCCAAGCATGCACACCTTTTCAGTCCTTATAAATGGGTGTTGTGAGAAGGGAAATGTTACAAAAGCTTGTGTTTTGTTAGAAGAAATGATAGAGAAGGGAATTCGGCCATCTGGTGTTACATTTGGGAGGTTAAGACAGTTGCTTATTAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCAAGAGAAAACGAATCTTCTTGTCAAGGAGCCTTTATTTGATTGA 1443 0.3874 MIKLCDPRRTLYFKWTTFAKMYSASESMQDISDLTKKVCKVMISCPKLALDTALDQTGIRVSSDLVENVLERFENAGMLAYRFFEWAGKQRNYSHSIRAYHAMIGSLAKIRQYQIMWDLVNDMRKRGMLNVETFCIIMRKYTRAKKIDEALYTFNVMENYGIPPNLAAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGKDPNLPKARQVFREMVDVGCDPDIVTYGIMVDILCKAGRVDEAVEVVKDMDANGCRPTSFIYSVLVHTYGVENRIEDAIGSFLEMGRKGIKADVVVYNALIGAFCKVNRFKNVDRVLNDMECNGVARNSRTYNVIISSLIGRGQTDEAFRAFRRMIKSCQPDSDTYTMMIKMFCERDELDMALKIWSYMRKKRFVPSMHTFSVLINGCCEKGNVTKACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQEKTNLLVKEPLFD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bach12g00873 480 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Bach12g00873 480 Gene3D Tetratricopeptide repeat domain 24 193 IPR011990 GO:0005515
Bach12g00873 480 Gene3D Tetratricopeptide repeat domain 263 330 IPR011990 GO:0005515
Bach12g00873 480 Pfam PPR repeat 230 261 IPR002885 -
Bach12g00873 480 Pfam PPR repeat family 164 209 IPR002885 -
Bach12g00873 480 Pfam PPR repeat family 304 350 IPR002885 -
Bach12g00873 480 Pfam PPR repeat family 380 420 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 133 165 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 342 369 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 168 195 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 99 128 IPR002885 -
Bach12g00873 480 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Bach12g00873 480 Gene3D Tetratricopeptide repeat domain 331 476 IPR011990 GO:0005515
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Bach12g00873 480 Pfam PPR repeat 133 162 IPR002885 -
Bach12g00873 480 Pfam PPR repeat 272 301 IPR002885 -
Bach12g00873 480 Pfam PPR repeat 99 127 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Bach12g00873 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Bach12g00873 480 PANTHER OS03G0856100 PROTEIN 66 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00873 Bach-Chr12 6151361 6152803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00873 117 469 Miscellaneous Gene Families AT4G11690 25.344 1.46e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00873 - - qsa:O6P43_019783 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g00873 12 6151361 6152803 Bach12g00873 12 6151361 6152803 ECH