Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00483 ATGGGATTCTTCAGCGGTTTGATCATCGGCATCGTTCTTGGTGTTGGCTTCATCGTCGCTTTTGCTCGTTATGAAAGTAACAGAGCCAGGCATCGTTCCGATTTGGTAAAATCTCGAATTATCATTGATTTCGGTTTATTTCTTCCTTACTACGATTCTTTTTCGTATCAGAATGCTGGTGTTGAAGGCCAAGACTATCGCAGCTTTCGCAAGGATGACAGTGGAGGATTCGAGAAAAATTCTCCCCCCAAAGTGGTATCCATCATGGGTGATTTTCCCTCGAAGACAGAATTAACTTGGCTTAATAAACAACTCGAGAAAATTTGGCCTTATGTTGATGAGGCAGCATCGGAGTTGATAAGAAGCAATGTGGAACCAATTCTCGAACAATACAGGCCAGTTATCTTATCTGCACTCAAGTTTTCCAAGTTGACTCTTGGTACAGTTGCTCCACAATTCACAGGCATATCAATTATAGAAGAGGAAAGTGGGACTGATGGAGTGACGATGGAGATAGAAATGCAGTGGGATGGTAACCCAAATATAGTTCTTGACATTAAAACCCTAGTTGGTGTTGCATTACCTATACAGGTAAAAAACATTGGATTCACTGGAGTTTTCAGGTTAATCTTCAAACCACTAGTCGGTGAATTTCCTGCTTTTGGTGCAGTTTGCTTTTCCTTGAGAGAAAAGAAAAGTCTGGATTTTACTCTTAAGGTCATTGGTGGTGAAATATCTTCTATCCCAGGGATATCTGATGCTTTGGAGGTATGGGGAAAGTTCGCTGTTATGGAAACAATTCGAGATGCTATTGAAGATTCTATAACATGGCCAGTACGCAAAATCATACCTATTATACCAGGTGATTATAGTGATCTGGAACTGAAGCCGATTGGGACACTAGAAGTGAAGTTAGTGCAAGCGAAGGACTTAATGAATAAAGATCTGATCGGCAAATCCGATCCTTTTGCGGTGTTATTTGTACGTCCGCTTCGTGACAGAACCCAAACCAGCAAAACTATTAATAACCAATTAAATCCAGTATGGAACGAGCACTTTGAGTTCACTGTTGAGGATATATCTACACAGCACTTGACTATAAGAGTTTTTGATGATGAAGGCGTTCAGGCTGCTGAGCTTATTGGTTGTGCGCAAGTGCGGCTCAAGGACCTTGAACCTGGTAAAGTCAAGGATGTGTGGTTGAAACTCGTTAAGGATTTAGAGGTTCAAAGAGATAATAAATATAGGGGTGAGGTGCAAGTGGAGCTCTTGTACTGCCCACATGGTGTTGAGAACAGCTTTAAAAACCCTTTCGACCCTGATTACTCATTAACCTCATTGGAGAAGTCCCTTAAGAGTGGAGCTGATGGGGATAATGACCTTCGAACATCAGGATCACATAGGAAAAGTAATGTGATTGTAAGAGGGGTATTATCCGTCACGGTGATATCTGCTGAAGACTTACCATCAGTGGACTTCATGGGCAAGGCTGACCCTTATGTGGTCCTCAGTTTGAAAAAATCCGAGAAAAAACTCAAGACTAGGGTTGTAAATGAAAGCTTAAATCCAGTTTGGAATCAAACATTTGACTTTGTTGTGGAGGATGGTTTACATGACATGTTGTTTCTTGAAGTCTGGGATCATGATACTTTTGGGAAGAATAAAATTGGAAGAGTGTTAATGACGCTCACAAGGGTCCTCTTGGAAGGGGAAGTTCAGGAAACATTTCCTATAGATGGTTCTAAATCAGGGAAGCTGAATTTGCATCTCAAGTGGACACCACAGCATAAGTATCGGGATTCTTTGTAG 1809 0.4129 MGFFSGLIIGIVLGVGFIVAFARYESNRARHRSDLVKSRIIIDFGLFLPYYDSFSYQNAGVEGQDYRSFRKDDSGGFEKNSPPKVVSIMGDFPSKTELTWLNKQLEKIWPYVDEAASELIRSNVEPILEQYRPVILSALKFSKLTLGTVAPQFTGISIIEEESGTDGVTMEIEMQWDGNPNIVLDIKTLVGVALPIQVKNIGFTGVFRLIFKPLVGEFPAFGAVCFSLREKKSLDFTLKVIGGEISSIPGISDALEVWGKFAVMETIRDAIEDSITWPVRKIIPIIPGDYSDLELKPIGTLEVKLVQAKDLMNKDLIGKSDPFAVLFVRPLRDRTQTSKTINNQLNPVWNEHFEFTVEDISTQHLTIRVFDDEGVQAAELIGCAQVRLKDLEPGKVKDVWLKLVKDLEVQRDNKYRGEVQVELLYCPHGVENSFKNPFDPDYSLTSLEKSLKSGADGDNDLRTSGSHRKSNVIVRGVLSVTVISAEDLPSVDFMGKADPYVVLSLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHDMLFLEVWDHDTFGKNKIGRVLMTLTRVLLEGEVQETFPIDGSKSGKLNLHLKWTPQHKYRDSL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00483 602 CDD SMP_SYT 100 285 - -
Bach12g00483 602 PRINTS C2 domain signature 541 549 IPR000008 -
Bach12g00483 602 PRINTS C2 domain signature 519 532 IPR000008 -
Bach12g00483 602 PRINTS C2 domain signature 493 505 IPR000008 -
Bach12g00483 602 Gene3D C2 domain 295 433 IPR035892 -
Bach12g00483 602 Gene3D C2 domain 473 601 IPR035892 -
Bach12g00483 602 ProSiteProfiles C2 domain profile. 457 576 IPR000008 -
Bach12g00483 602 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 592 IPR045050 GO:0008289
Bach12g00483 602 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 297 428 IPR035892 -
Bach12g00483 602 FunFam Plant synaptotagmin 294 436 - -
Bach12g00483 602 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 286 IPR031468 GO:0008289
Bach12g00483 602 Pfam C2 domain 476 577 IPR000008 -
Bach12g00483 602 Pfam C2 domain 299 403 IPR000008 -
Bach12g00483 602 SMART C2_3c 300 400 IPR000008 -
Bach12g00483 602 SMART C2_3c 477 575 IPR000008 -
Bach12g00483 602 ProSiteProfiles C2 domain profile. 280 401 IPR000008 -
Bach12g00483 602 CDD C2 478 574 - -
Bach12g00483 602 CDD C2 301 403 - -
Bach12g00483 602 FunFam Extended synaptotagmin-2 458 596 - -
Bach12g00483 602 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 472 595 IPR035892 -
Bach12g00483 602 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 99 252 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00483 Bach-Chr12 3294712 3298949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach12g00483 434 566 Lipid Metabolism Gene Families AT1G51570 30.075 3.46e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00483 - - gmx:100787972 827.009