Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00478 ATGGGTACTCTTCTCAAGTGCCACAGACCTTTCTTCTTCTCACTTGTTCCTTACTCTGCTCGGACAACTCAACTGAGAACCAATCACAGTGCTCACGCCGCCATTTTCAGGAGGAGGAAGCTATGTCGTTTTACTCGTTATTTTAGTGTCACTTCTTTGGGGCCATCGCAGCCATCGACTGCCCGTCAGAACTGCGCTAAATCCGACGTTGAGAGGGTCAAGAGTCCATTGCCGGAGCTTTGGCTGCACAACACCATGAGTAAAAGGAAGGAACTTTTCAAGCCGAAAGTAGAAGGCAAAGTGGGAATGTATGTATGCGGAGTTACTGCGTACGATCTCAGTCATATTGGACATGCTCGCGTCTACATCAATTTTGATGTTCTATACAGATACCTGAAGTACTTGGAATTTGAAGTCTGTTATGTTCGCAATTTCACTGATGTTGATGACAAGATAATTGCTAGAGCAAAGGAGTTGGGGGAGAATCCAATCAGTTTGAGCCAGCGTTACTGTGAGGAGTTCAATCAAGATATGGCAACTCTGAATTGTCTGCCTCCTTCTGTGGAACCACGAGTCTCAGAGCACATGCATCAAATCATTGATATGATTAAGCAGATTCTTAATAATGGATATGCCTACATTGTTGACGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCTGGACGGGATCTAGAAGATAATCGAGCTGGCGAGAGGGTTGCTGTTGATTCAAGAAAGAAAAATCCTGCTGACTTTGCATTATGGAAGTCTGCAAAGCAGGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCCGCTTATCTTGGTCACTCTTTTGACATCCATGGTGGGGGGATAGACCTTGTGTTTCCTCATCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGAGAAAAGCAATATTAGCTTCTGGATACACAATGGCTTTGTCACTGTTGATTCGGAGAAGATGTCTAAGTCTCTGGGAAACTTCTTCACAATTCGGCAGGTTATAGACCTTTATCATCCACTGGCTTTGAGACATTTTTTGATGGGAGCCCATTACCGATCTCCAATTAACTACTCTTATATACAGCTTGAAAGTGCTTCAGACCGTGCTTACTATATATACGAGACATTACATGAATGTGAAAGTTTTTTGCGTCAGCATGATCCAACGACTAATGAGGATTCCTTTCCACCACCTGATACTTCAAATATCATTGATAAGTTCCATGATGTTTTTGTGGCCTCTATGTCTGATGATCTTCACACTCCGGTTGTATTGGCCGCTATGTCTGACCCATTAAAAGCAATCAATGATCTGCTACATACTCGTAAGGGTAAAAAACAAGAATTGCGAATAGAATCACTTGCTGCTTTGGGAAAGAGTGTCAAGAATGTTTTGACAGTTTTGGGACTTACGCCTACAAGTTATTCTGAGGTTCTACAGCAGCTGAGGGAAAAAGCTTTAAAACGTGCGAATTTGACAGAAGATGAAGTTTTGCAGAAAATTGAAGAACGGGCTGCTGCTAGAATAAACAAGGAATATGAAAAATCAGATGCAATTAGGAAGGATTTGGCTGTTTTAGGTATAACTCTTATGGACAGTCCCAGTGATACAACTTGGAGGCCCACTCTACCGCTCACACTTCAAAAGCAGCTAACTGATGCACATTGA 1740 0.4259 MGTLLKCHRPFFFSLVPYSARTTQLRTNHSAHAAIFRRRKLCRFTRYFSVTSLGPSQPSTARQNCAKSDVERVKSPLPELWLHNTMSKRKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYINFDVLYRYLKYLEFEVCYVRNFTDVDDKIIARAKELGENPISLSQRYCEEFNQDMATLNCLPPSVEPRVSEHMHQIIDMIKQILNNGYAYIVDGDVYFNVEKFPEYGKLSGRDLEDNRAGERVAVDSRKKNPADFALWKSAKQGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGIDLVFPHHENEIAQSCAACEKSNISFWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRHFLMGAHYRSPINYSYIQLESASDRAYYIYETLHECESFLRQHDPTTNEDSFPPPDTSNIIDKFHDVFVASMSDDLHTPVVLAAMSDPLKAINDLLHTRKGKKQELRIESLAALGKSVKNVLTVLGLTPTSYSEVLQQLREKALKRANLTEDEVLQKIEERAAARINKEYEKSDAIRKDLAVLGITLMDSPSDTTWRPTLPLTLQKQLTDAH 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00478 579 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 382 565 - -
Bach12g00478 579 Gene3D HUPs 61 382 IPR014729 -
Bach12g00478 579 SMART dalr_2_4 434 500 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Bach12g00478 579 Pfam tRNA synthetases class I (C) catalytic domain 93 389 IPR032678 -
Bach12g00478 579 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 421 565 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bach12g00478 579 PRINTS Cysteinyl-tRNA synthetase signature 139 148 IPR024909 -
Bach12g00478 579 PRINTS Cysteinyl-tRNA synthetase signature 103 114 IPR024909 -
Bach12g00478 579 PRINTS Cysteinyl-tRNA synthetase signature 299 320 IPR024909 -
Bach12g00478 579 PRINTS Cysteinyl-tRNA synthetase signature 268 286 IPR024909 -
Bach12g00478 579 CDD CysRS_core 81 382 IPR032678 -
Bach12g00478 579 PANTHER CYSTEINYL-TRNA SYNTHETASE 72 574 IPR024909 -
Bach12g00478 579 NCBIfam cysteine--tRNA ligase 81 564 IPR015803 GO:0004817|GO:0005524|GO:0006423
Bach12g00478 579 SUPERFAMILY Nucleotidylyl transferase 79 388 - -
Bach12g00478 579 Hamap Cysteine--tRNA ligase [cysS]. 80 566 IPR015803 GO:0004817|GO:0005524|GO:0006423
Bach12g00478 579 Gene3D - 383 565 - -
Bach12g00478 579 FunFam Cysteine--tRNA ligase 79 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00478 Bach-Chr12 3272589 3276267 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00478 K01883 - qsa:O6P43_019465 939.102