Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01388 ATGAAGAGACCTTCAGCTCTGGTGGATGTGTTTCTGGTACTAGCATTGTTTAGTTGCAACTCATGGACAACGCGGAGCAGCTCAGAAAGCTGCAATCCAAATTATGTTGAGGACATTCGACCTCATAGTGTTAGTATTACTGAATTTGGAGCCGTTGGAGATGGAATCACTCTCAACACAAAAGCATTTCAGAATGCCATTTTCTACCTAAATTCTTTCGCAGACAAAGGCGGAGCGAAGCTTTTTGTCCCAGCTGGCCAATGGTTAACCGGAAGTTTTGATCTTATCAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGATGATTGGCCCATTGTGGATTCCCTACCCTCATATGGTCGAGGAAGGGAGTTGCCTGGTGGAAGGCATAAAAGCCTCATTTATGGTAACAATTTGACTGATGTTATCATTACAGGTAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTCGGAACAAAACATTGGACTATACACGTCCCCATTTGGTTGAATTGATGAATTCATCTGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCACCATTTTGGAATATTCACCCTGTATATTGCAGCCATGTTACAGTTCAAAATGTCACAATCCATGCTCCCTCCAGTTCTCCGAATACAGATGGGATAAATCCAGATTCTTCAGATGATATATGCATTGAAGATTGTTACATAAGCACCGGCGACGATCTGGTTGCCATCAAAAGTGGTTGGGATGAATATGGAATTTCGTTTGGTCGTCCTAGTACAAACATTCTCATCCGTAGGCTCGTTGGGAAAACAACAAGCGCAGGAATCGCTATTGGAAGTGAGATGTCTGGAGGTGTTTCAGATGTTTTTGCAGAGGATATTTACATTTTTGATTCGCATACAGGGATTGGAATAAAGACTGCTCGCGGAAGGGGTGGTTATGTTCGAAATGTCTATATCTCAAAAATGACATTGGATAATGTAGATATTGCTATTAGGCTCAATGGCTTATACAAAGAACATCCTGATGATGATTACAACCCAGATGCTTTGCCTGTAATAGAAAAGATTACTATCAAGGATGTGATAGGAGAAAATATCAAACGCGCAGGCCTTATACAAGGTATAAAAGGTGACAATTTTGTCAACATTTGCCTATCAAATATCACACTTAGTGTGAGCTCAAAAACTCCATGGAACTGCTCGAACGTTGAAGGATACTCGGATTTGCTTTCGCCTGAAGCTTGTGATCCTCTCGAAGAAAGTATATTCCCGGAGCATGTTTCAGATTGTTACAATCCAGAAAATCCATTAAGGAGTTCAAGCACTAGAAATCAAGGTGCTTCCTGGTTGCTGTCTTGGTAA 1404 0.411 MKRPSALVDVFLVLALFSCNSWTTRSSSESCNPNYVEDIRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPIVDSLPSYGRGRELPGGRHKSLIYGNNLTDVIITGNNGTIDGQGSIWWSRFRNKTLDYTRPHLVELMNSSGILISNLTFLNSPFWNIHPVYCSHVTVQNVTIHAPSSSPNTDGINPDSSDDICIEDCYISTGDDLVAIKSGWDEYGISFGRPSTNILIRRLVGKTTSAGIAIGSEMSGGVSDVFAEDIYIFDSHTGIGIKTARGRGGYVRNVYISKMTLDNVDIAIRLNGLYKEHPDDDYNPDALPVIEKITIKDVIGENIKRAGLIQGIKGDNFVNICLSNITLSVSSKTPWNCSNVEGYSDLLSPEACDPLEESIFPEHVSDCYNPENPLRSSSTRNQGASWLLSW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01388 467 SUPERFAMILY Pectin lyase-like 39 431 IPR011050 -
Arst9g01388 467 PANTHER PECTIN LYASE-RELATED 14 453 - -
Arst9g01388 467 Pfam Glycosyl hydrolases family 28 137 418 IPR000743 GO:0004650|GO:0005975
Arst9g01388 467 Gene3D - 21 422 IPR012334 -
Arst9g01388 467 MobiDBLite consensus disorder prediction 448 467 - -
Arst9g01388 467 SMART pbh1 272 293 IPR006626 -
Arst9g01388 467 SMART pbh1 328 349 IPR006626 -
Arst9g01388 467 SMART pbh1 211 237 IPR006626 -
Arst9g01388 467 SMART pbh1 238 270 IPR006626 -
Arst9g01388 467 SMART pbh1 299 320 IPR006626 -
Arst9g01388 467 SMART pbh1 142 195 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01388 Arst-Chr9 19488552 19492140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01388 1 467 Glycoside Hydrolase AT3G62110 67.300 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01388 - - gmx:100786985 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01388 9 19488552 19492140 Arst9g01388 9 19488552 19492140 ECH
Arst6g00729 6 6539669 6542894 Arst9g01388 9 19488552 19492140 PCT