Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00616 ATGGCTCACCAACCTTTTGACCCATACTACGCATACCAGCAGCAGGATGAGCGAAGCCACATCAACACGTTGTTTGTGTCGGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAATCTCTTCCGCCGTCGCCCCGGCTTCGACTCCTGCCAGCTTAAGTACACCGGACGCGCCAACCAGGTTGTTGCGTTTGCTACTTTTTTCAATCATCAATCGGCGATGGCAGCATTGCACGCTTTAAATGGCGTGAAATTTGATCCACAAGCTGGTTCTGTTTTGCATATTGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGTAAGCCAGGTAGCGGAGCCTATGTTGTTATAGATAAACGGTCTAAAGGAGAGGCTGATGTGCAAGGGTCATCAAGTGATGATGGTGACAGTGATCCTGATGAACCATCAGGAAGTGGTGGCAGCCATGGTGATTTAGCAACCACTAAAAGCAGTGAGATTAAGTTTGGCTCTGACAGTGCTGTGTCTGCGGAGCAGCATGAAAGGGGTCCTGATGGAGGACCATGCTCTACTCTCTTCATTGCAAATCTTGGTCCAAACTGCACTGAAGATGAACTGAGACAAACTTTCTCAGTGAAGTTGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGCATGCTGTCATCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 728 0.4918 MAHQPFDPYYAYQQQDERSHINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEADVQGSSSDDGDSDPDEPSGSGGSHGDLATTKSSEIKFGSDSAVSAEQHERGPDGGPCSTLFIANLGPNCTEDELRQTFSVYAGFNMVKMRSRGGMPVAFADFDEVEQATKVMEQLQGSMLSSSDRGGMHIEYARSKMRKH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00616 265 Gene3D - 178 265 IPR012677 -
Arst9g00616 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Arst9g00616 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Arst9g00616 265 FunFam RNA-binding protein with multiple splicing 176 265 - -
Arst9g00616 265 FunFam RNA-binding protein with multiple splicing 2 19 109 - -
Arst9g00616 265 Gene3D - 17 104 IPR012677 -
Arst9g00616 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Arst9g00616 265 CDD RRM_scw1_like 181 259 - -
Arst9g00616 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Arst9g00616 265 SMART rrm1_1 23 97 IPR000504 GO:0003723
Arst9g00616 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Arst9g00616 265 MobiDBLite consensus disorder prediction 102 155 - -
Arst9g00616 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 141 261 - -
Arst9g00616 265 SUPERFAMILY RNA-binding domain, RBD 22 246 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00616 Arst-Chr9 5375617 5379001 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00616 - - gmx:100810989 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g00616 9 5375617 5379001 Arst9g00616 9 5375617 5379001 ECH