Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00442 ATGGCCACTCCCATTGGAAAAGGGAATTGTTCATTGAACCTTTTCCTACGAAATTGGAGAAACCTTTGCTTCCATTTCCATCGATTCTCAACTTCTTCCATCGAGTCTTCTTCTCCCTTACCCTTCAAATCCATCACTTCCACTATTAGGACCAAGCCAAGTAAGAGGATTCCCAATAACAGTTCCTTCTTCATACCCATTCCTCATCAAACCATTCCTCAAGCCAAAGGCCAAGACCTTGATTTCATTAACGTTTCCCACAGCCACATAATTCACTCTCAGTGGGAAAATCTCCAACCTTTCTCACATTCCCTCACACCCTTCAGGGTCAAACACATCCTCCTCAAGCTCAAAAATGACGCCGTTCTCTCCCTCAAATTTTCCAACTGGGTCCAAAACCAAAACCCTAGTTGCCACTCCCTTGAAACACATGCCATCTTACTCCATACTCTTGCCAAAAACCGAAACTTTAGAGCCATTCAAACGCTCCTCAAGAGGATCATCGCTGATTCAGGCGCTTTGGATTTGGATTTGCCTTCTAAGCTCTTTGAATCATTGTTGTGTTCTTACCGTTTGTGTGATTCCACCCCTCTTGTTTTTGATGCGCTTTTCAAGACTTTTGCGCATTTGAATAAGATTAGGAATGCCACTAACACGTTTTGCCGCATGAAGGAGTATGGGTTCTTCCCCACTGTTGAGTCCTGCAATGCTTTCATGAGTTCTCTGATTCATTTGCAGAGGCCTGAGGTAGCTTTGTTGTTCTACTGCGAGATGCGTAGGTCTTGTGTTTCGATCAACGTATACACTGTTAACATGGTTATATGTGCTTATTGCAAGTTAGGGGAGTTGCAGAAGGGTTTTGAGGTGTTGGAGAAGATGAGGGACATGGGTTTGAGTCCAAATGTTGTGTCGTTTAATGCATTGATTTCAGGGTATTGTAATAAGGGTATGGTTAGTTTGGCATTGAAGGTTAAGTCCTTGATGGAGCATAATGGGGTGCAACCAAATGTGGTTACTTTTAACACCATCATCAATGGGTTCTGCAAGGAGAGGAAGTTGCATGAGGCTAACAAGGTTTTCAATGAGATGAAGGGTTGCAATGTGGCTGCTAATATTGTGACATACAATACTTTGATCAATGGGTATAGTTCAGTTGGGAACAGCGAAATGGGGACAAGGCTTTATGAGGAGATGAGGAGGGATGGGATTAAGGCTGATATACTGACTTATAATGCATTGATTTTGGGATTGTGTAAGGAGGGGAAAACGAAAAAGGCTGCGTATCTGGTTAAGGAACTTGATAAGGAGAACTTGGTCCCGAATGCGTCAACCTTTTCAGCACTGATCACCGGGCAGTGTGCGAGAAAGAACTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGATAAGGAGTGGTTGTAATCCGAATGAGCATACGTTCAAGATGTTGATGTCTGCTTTCTTGCATAATGAAGACTTTGATGGTGCTGTGCAGGTCTTGAGGGACATGTTGGGCAGGTCGATGGCTCCTGATTCTCTTGTCTTGTCTGAGCTCTGTGGTGGACTTTGTAGGTGTGGGAGAAATCAATTGGCATCCACACTATGTAGTGAGATGGAAAATAAGCATCTATTGCCGGAAGGTTTTGACAAAGGACAGATAACCATTGATCATCCAGAGAATGAGACAAAGAACTGA 1695 0.4336 MATPIGKGNCSLNLFLRNWRNLCFHFHRFSTSSIESSSPLPFKSITSTIRTKPSKRIPNNSSFFIPIPHQTIPQAKGQDLDFINVSHSHIIHSQWENLQPFSHSLTPFRVKHILLKLKNDAVLSLKFSNWVQNQNPSCHSLETHAILLHTLAKNRNFRAIQTLLKRIIADSGALDLDLPSKLFESLLCSYRLCDSTPLVFDALFKTFAHLNKIRNATNTFCRMKEYGFFPTVESCNAFMSSLIHLQRPEVALLFYCEMRRSCVSINVYTVNMVICAYCKLGELQKGFEVLEKMRDMGLSPNVVSFNALISGYCNKGMVSLALKVKSLMEHNGVQPNVVTFNTIINGFCKERKLHEANKVFNEMKGCNVAANIVTYNTLINGYSSVGNSEMGTRLYEEMRRDGIKADILTYNALILGLCKEGKTKKAAYLVKELDKENLVPNASTFSALITGQCARKNSERAFLIYRSMIRSGCNPNEHTFKMLMSAFLHNEDFDGAVQVLRDMLGRSMAPDSLVLSELCGGLCRCGRNQLASTLCSEMENKHLLPEGFDKGQITIDHPENETKN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00442 564 Gene3D Tetratricopeptide repeat domain 174 294 IPR011990 GO:0005515
Arst9g00442 564 Gene3D Tetratricopeptide repeat domain 295 363 IPR011990 GO:0005515
Arst9g00442 564 Gene3D Tetratricopeptide repeat domain 364 432 IPR011990 GO:0005515
Arst9g00442 564 Pfam PPR repeat 331 364 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Arst9g00442 564 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 49 545 - -
Arst9g00442 564 Pfam Pentatricopeptide repeat domain 257 313 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Arst9g00442 564 Gene3D Tetratricopeptide repeat domain 433 554 IPR011990 GO:0005515
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Arst9g00442 564 Pfam PPR repeat family 447 487 IPR002885 -
Arst9g00442 564 Pfam PPR repeat family 371 418 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 478 511 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 268 302 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 234 266 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 444 477 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 303 337 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Arst9g00442 564 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Arst9g00442 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00442 Arst-Chr9 3702327 3707791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g00442 207 547 Glycosyltransferase AT1G05670 28.363 1.49e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00442 - - aprc:113849013 757.673