Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g00430 ATGCAAATCCAAATGGCTTCCGTGCCCTTCTTCTCTCGTTTCCATTTGCTTCCTTCAAACCAATCATCATTTCCACATTCAACCTTTCACCTTCACCTTCACAACCCACAACACCCATTCATCACCAATGCAAACCCCTCTTCTTCTGATCACAAAGCTCAAGACTTTGCCACAAACCCAGTCCAGGGAATCGGTGGCTCTCCGAAGAAGAAGAAGGCCAAGGAGAAGGTTCACTGGGTTTGCAGCAATTGCGGCTACAGTGCAGGGCAATGGTGGGGTGTGTGTAGATCATGTGGTGAAGCTGGAACCATGAAAGAGTTTCATGAAACCAAAGGAAGTGACAACAAGGTGAGTGGTTTTGCTGTTATGGATGGTGCTGTTGGGTCATGGCTACCTCACCAGGAAGAAACTCAGTTGCGTCCATTGAGATTGGCTGAGGTCAATAGAGGTCTTGATCAGCTTCATTGGAGGATTCCATTAAACGGTCCTTGTGGAAATGAAGTTTCTAGAGTGCTTGGTGGAGGCCTTGTACCAGGCTCTTTGACTTTAGTTGGTGGCGATCCTGGAGTCGGGAAAAGTACTCTGCTGCTGCAGATTGCTGCAATGATCACAGAAGAGTGCAATGATAGCGAAGCATCTCCAGTTGTGTACGTCTCTGGTGAAGAGAGTGTTGAGCAAATAGGCAATAGGGCGGATCGCCTTGGCATTACAGAAGACATTTATTTATATTCAAGTAATGATATTGAGGATATATTGAAAAAAGTTCAGTATCTCTCCCCTCGGGCTCTGGTTATTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAACTTTGCTGCGATTTGCAAAGACAACAAACATCCCCGTTCTTTTGATTGGCCATGTGACTAAATCTGGAGACATAGCTGGACCTCGTGTCTTGGAGCATATTGTAGACGTTGTTCTGTATATGGAAGGGGAGAAGTACTCCACCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCGAGTGAAATGTTTCTCAGTGAGCAACATTTAGATTCGGAAATATTAGCGGGGCTAGCTGTTGCTGTGATAATGGATGGCTCCCGAACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGCTCAACTGGTTCAAGGCAAGTTAATGGGATCCATGCAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGCCTACAAGAAAATGCTGTGTTTTTGAATGTTGTTAGTGGGTTGACACTTACTGAGACTGCAGGAGATCTTGCAATAGCAGCTGCGATTTGTAGCAGTTTCTTGGAGGTCCCAATACCAAATGACATTGCATTCATCGGTGAAATTGGACTTGGTGGCGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTATACACGGTAGCCAAATTGGGTTACAGAATGTGCATAGTGCCAAAAACAGCTGAAAAAACTTTAGGAAATGAAGGTCTAGAAAAGATGACACTTGTGGGTTGCAGGAATCTGAAAGAAGTTATTTACACAGTCTTTCCCAAGATCACAGGTTCAAGCCATGGAAACAGCCACTAA 1692 0.4403 MQIQMASVPFFSRFHLLPSNQSSFPHSTFHLHLHNPQHPFITNANPSSSDHKAQDFATNPVQGIGGSPKKKKAKEKVHWVCSNCGYSAGQWWGVCRSCGEAGTMKEFHETKGSDNKVSGFAVMDGAVGSWLPHQEETQLRPLRLAEVNRGLDQLHWRIPLNGPCGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAMITEECNDSEASPVVYVSGEESVEQIGNRADRLGITEDIYLYSSNDIEDILKKVQYLSPRALVIDSIQTVYLKGIMGSPGGIMQVKECTSTLLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSTHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIHANRADMIISVLIKQAGLRLQENAVFLNVVSGLTLTETAGDLAIAAAICSSFLEVPIPNDIAFIGEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKTAEKTLGNEGLEKMTLVGCRNLKEVIYTVFPKITGSSHGNSH 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g00430 563 Gene3D - 167 367 IPR027417 -
Arst9g00430 563 NCBIfam DNA repair protein RadA 73 534 IPR004504 GO:0003684|GO:0005524|GO:0006281
Arst9g00430 563 SMART AAA_5 178 336 IPR003593 GO:0016887
Arst9g00430 563 FunFam DNA repair protein RadA 162 367 - -
Arst9g00430 563 CDD RadA_SMS_N 79 369 - -
Arst9g00430 563 FunFam DNA repair protein radA isogeny 385 554 - -
Arst9g00430 563 SUPERFAMILY Ribosomal protein S5 domain 2-like 347 551 IPR020568 -
Arst9g00430 563 Gene3D - 386 559 IPR014721 -
Arst9g00430 563 Pfam Rubredoxin metal binding domain 79 106 IPR041166 -
Arst9g00430 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 361 IPR027417 -
Arst9g00430 563 Pfam AAA domain 171 314 - -
Arst9g00430 563 ProSiteProfiles RecA family profile 1. 154 310 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Arst9g00430 563 PRINTS DNA repair protein radA signature 340 366 - -
Arst9g00430 563 PRINTS DNA repair protein radA signature 415 438 - -
Arst9g00430 563 PRINTS DNA repair protein radA signature 81 105 - -
Arst9g00430 563 PRINTS DNA repair protein radA signature 266 290 - -
Arst9g00430 563 PRINTS DNA repair protein radA signature 170 198 - -
Arst9g00430 563 PRINTS DNA repair protein radA signature 305 333 - -
Arst9g00430 563 Pfam Subunit ChlI of Mg-chelatase 432 522 - -
Arst9g00430 563 PANTHER DNA REPAIR PROTEIN RADA 23 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g00430 Arst-Chr9 3537981 3543415 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g00430 K04485 - gmx:100794165 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g00430 9 3537981 3543415 Arst9g00430 9 3537981 3543415 ECH
Arst7g02236 7 51619603 51627544 Arst9g00430 9 3537981 3543415 PCT