LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst9g00424	ATGCAAATGCTGTTATATTCACTTTTGGTTCTTATCGACTTGGTTCATGGTCCTGGGGCTGACTTGGATACTTTATGTATTGGGCCATCTTATGTTAATCGAGAGGAGGATTTTTTCTTTGTATTGCATGACATCCTTGCTAACATGGAGGAAATAACAGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTAATGAAATTCAAGTTTGATGGAATATCGATTGATCTACTTTATGCAAGTATTTCTTGTTTAGTTGTGCGTGATGACTTGGACATAGCAGACGTTTCTATTCTACAAAACATTGATGAGCCAACAGTACGAAGTTTAAATGGCTGCAGGGTTGCAGATCAAATTCTTAAGCTTGTTCCAAATGTTCAGAATTTTCGAACAACACTTCGTTGCCTAAAGTTTTGGGCGAAAAGGAGAGGTGTCTATTCCAATGTTACTGGTTTTCTTGGCGGTGTTAACTTGGCCCTTCTTGTGGCTCGAGTGTGCCAATTATATCCAAATGCAATTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTGTATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCTATAGAGGAGAATGAGCTGGGGTTTTCTGTTTGGGATCCTCGTAAAAATCCTCGTGATCGAACCCATCATATGCCAATCATTACTCCTGCTTATCCTTGTATGAATTCTAGTTATAATGTTTCTACAAGCACCCTTCGTGTTATGATGGAGCAGTTTCAATATAGCAACAAGATATGTGGGGAAGTTGAATTGAATAAGGCTCAATGGACTGCTCTATTTGAGCCCTATGCTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTAGACATAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGACAACTAACTTTAATGATTGAGCGTGATACTTTTGGGAAGTTGCAATGTCATCCCTATCCTTATGAGTATATGGATATGTCAAGGCAGTGTGCACATTCTGCTTTCTTCATGGGATTGCAACGGAAGTCAGGGGAGATTGTTCAAGAAGGTCAGCAATTTGATATACGTGGGACTGTTGATGAGTTTCGACATTCAGTTAATATGTACATGTTCTGGAAGCCGGGGATGGACATTTATGTTTCTCATGTTCGTAGAAGGCAAATCCCATCCTACGTGTTTCCTGAGGGTTATAAACGATCTCGACAGTCAAGGCCAACTGGCCAACTGGACAATCCTCATAAATCATCTCATGAGGATATCTCTGGAACTGAACATTGTGAAAGAAACCCAAAAAGGAAGTATGTTGATAAGGTGGATGTGAAACGGGATATTGTAGTGAAAAAACAATTTAGTGTTCCAATGGATAGCTTCGCTAGAAGCAGGTTGAGCATGGGTTTTAGTGGTTTAACTGCTGATATGCACAATAGTGGCCATATGATTGAGAGGACAAAGTCTCCTGAATCTGACACTGAGTGTGCCTCAAATTCTAGTGTGGTTACCTCTCTTACAAGTGATGGTGGTTCCTGTGAAGATGTTGGGTCTACACAAATAGCAGTTTCAGTTGAAGATCACAAGGGTGTTGACGGGACGATCAGTGGCAGGTTTCATGATACGGCGTGTGGGATACATTCTGTCCCACTTGTGGAAAATGAAGTGGCTAGAGGAAATGAAGTATTACAAAATGAGCTACAACAACAGTTGGAGCCAAATCAAATGCCAGGGATGGTTCTTAATTCTAAAGGAAGCATCAACTCGGATGTTGTGCAAAAAGCAATCATAAGGAGATTGACACCTTGTGCAATGAAGTAA	1833	0.4113	MQMLLYSLLVLIDLVHGPGADLDTLCIGPSYVNREEDFFFVLHDILANMEEITELQPIPDAHVPVMKFKFDGISIDLLYASISCLVVRDDLDIADVSILQNIDEPTVRSLNGCRVADQILKLVPNVQNFRTTLRCLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYSNKICGEVELNKAQWTALFEPYAFFESYKNYLQVDIVAADVDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPYEYMDMSRQCAHSAFFMGLQRKSGEIVQEGQQFDIRGTVDEFRHSVNMYMFWKPGMDIYVSHVRRRQIPSYVFPEGYKRSRQSRPTGQLDNPHKSSHEDISGTEHCERNPKRKYVDKVDVKRDIVVKKQFSVPMDSFARSRLSMGFSGLTADMHNSGHMIERTKSPESDTECASNSSVVTSLTSDGGSCEDVGSTQIAVSVEDHKGVDGTISGRFHDTACGIHSVPLVENEVARGNEVLQNELQQQLEPNQMPGMVLNSKGSINSDVVQKAIIRRLTPCAMK	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst9g00424	610	MobiDBLite	consensus disorder prediction	404	438	-	-
	Arst9g00424	610	FunFam	Putative poly(A) polymerase gamma	104	271	-	-
	Arst9g00424	610	MobiDBLite	consensus disorder prediction	419	438	-	-
	Arst9g00424	610	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	275	402	IPR011068	GO:0003723\|GO:0016779\|GO:0031123
	Arst9g00424	610	SUPERFAMILY	PAP/OAS1 substrate-binding domain	124	273	-	-
	Arst9g00424	610	Pfam	Poly(A) polymerase predicted RNA binding domain	276	335	IPR007010	GO:0003723\|GO:0043631
	Arst9g00424	610	CDD	NT_PAP_TUTase	15	123	-	-
	Arst9g00424	610	Pfam	Poly(A) polymerase central domain	83	273	IPR007012	GO:0043631\|GO:1990817
	Arst9g00424	610	Gene3D	Poly(A) polymerase predicted RNA binding domain	275	391	-	-
	Arst9g00424	610	FunFam	Nuclear poly(A) polymerase 4	275	391	-	-
	Arst9g00424	610	Gene3D	-	118	271	-	-
	Arst9g00424	610	Gene3D	Beta Polymerase, domain 2	15	117	IPR043519	-
	Arst9g00424	610	PANTHER	POLY A POLYMERASE	15	441	-	-
	Arst9g00424	610	SUPERFAMILY	Nucleotidyltransferase	15	122	IPR043519	-
	Arst9g00424	610	Coils	Coil	610	610	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst9g00424	Arst-Chr9	3470199	3474932	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst9g00424	K14376		-	gmx:100783237	863.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst9g00424	9	3470199	3474932	Arst9g00424	9	3470199	3474932	ECH