Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03535 ATGGGATTCTTCGGCGGGATGTTCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTCGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTGTATTCACTAAGAGACAGAAGTTAAAATGGCTCAACACGCAACTCGACAAGATGTGGCCATTCATCAATGATGCAGCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTCGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTTTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGTGATGCTATTGAAGACTCTATAACTTGGCCAATGCGCAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTCCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTACATTCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAACGAATCCTTAAATCCAGTCTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACTCCACAGCACAAGTACCGGGATCCTTAG 1692 0.4309 MGFFGGMFIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVVFTKRQKLKWLNTQLDKMWPFINDAASELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVINNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03535 563 FunFam Plant synaptotagmin 259 401 - -
Arst8g03535 563 CDD SMP_SYT 60 250 - -
Arst8g03535 563 CDD C2 440 540 - -
Arst8g03535 563 SMART C2_3c 439 537 IPR000008 -
Arst8g03535 563 SMART C2_3c 265 365 IPR000008 -
Arst8g03535 563 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Arst8g03535 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 557 IPR035892 -
Arst8g03535 563 CDD C2 266 368 - -
Arst8g03535 563 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Arst8g03535 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Arst8g03535 563 ProSiteProfiles C2 domain profile. 243 366 IPR000008 -
Arst8g03535 563 Gene3D C2 domain 435 561 IPR035892 -
Arst8g03535 563 Gene3D C2 domain 260 398 IPR035892 -
Arst8g03535 563 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 554 IPR045050 GO:0008289
Arst8g03535 563 PRINTS C2 domain signature 455 467 IPR000008 -
Arst8g03535 563 PRINTS C2 domain signature 481 494 IPR000008 -
Arst8g03535 563 PRINTS C2 domain signature 503 511 IPR000008 -
Arst8g03535 563 Pfam C2 domain 438 539 IPR000008 -
Arst8g03535 563 Pfam C2 domain 264 368 IPR000008 -
Arst8g03535 563 ProSiteProfiles C2 domain profile. 421 538 IPR000008 -
Arst8g03535 563 FunFam Extended synaptotagmin-2 420 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03535 Arst-Chr8 46028384 46035830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03535 256 555 Lipid Metabolism Gene Families AT1G51570 22.492 4.16e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03535 - - gmx:100787972 934.095