Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g03437 ATGTCGAGTACACAAATACCATTGAGTGCAAGCATAGCTGCAGTGGAGCTGACGATTGCAATGCACCATGTTTTTCATGCTCCAGTAGACAAGATATTATGGGATGTCGGCGAACAAACGTATGCACATAAGATTCTTACAGGAAGACGATCTCTCATGTACACAATGAGACAAAAGAATGGTATCTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTAGGCATGGCTGTTGCACGAGATATGAAGGGGAGGCGAGAACGCATAGTAACAGTAATCAGCAATTTGACAACAATGGCCGGTCAAGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATTTGGTGGTAGTTTTGAATGACAGCCGGCATTCCCTACTCCCTAAAGTTGATGAGGGCCCAAAGACATCCATCAATGCCCTCTCTAGTACCTTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTCACAAAACGAATTGGTAGAGGTATGCATGAATGGGCAGCAAAAGTTGACGAATATGCCCGTGGGTTGATTGGCCCATTAGGTTCTACTCTCTTTGACGAGCTTGGTCTGTACTACATAGGCCCAGTGGATGGTAATAATATTGAAGATCTAGTTTGTGTTCTGCAAGAAGTTGCTTCGCTCGATTCAATGGGTCCTGTCTTGGTTCATGTTATAACTGATGATAATCAGGGAGTAGAAAACAATAAAAGAAGTGATATAACCGACGGGCAGGAAGATGGTTCTATAAAATCAAATTTTTTACATTATGATGTTCGGCAACGGACATATGGGGATTGCTTTGTGGAGACTTTGGTTTCAGAAGCCGAGAAAGACAAAGATATTGTAGTTGTTAATACAGGAACCATGATGGAGCCATCACTAGAGCTGTTTCGGGAAAAATTTCCTGATAGGTTTTTTGATGTGGGAATGGCCGAGCAACATGCAGTCACCTTTGCTTCTGGCTTGTCATGTGGTGGATTGAAGCCTTTCTGTGTTATACCTTCTTCCTTTCTACAAAGGGCATATGACCAGGTTGTCCATGATGTAGATCAACAGAAAATTCCGGTACGCTTTGTCATCACAAGTGCAGGATTGGTGGGCTCTGATGGTCCTCTCCAATGTGGGGCATTTGACATAACCTTTATGTCATGCTTACCGAACATGATTGTTATGGCACCGTCTGATGAAATCGAACTCGTGCACATGGTGGCTACTGCTATTCATGTCAATGATCGGCCGATTTGCTTTCGGTATCCCAGGGGTGCTCTTGTTGGGAGAGACCAAACTATATGTGATGGAGTCCCCATTGAGATTGGAGAAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGCCTTAAGGCTCATACACTTCTTGCAAAGCTTGGCATTGAGGTCACTGTTGCTGATGCAAGGTTTTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTCTGTAAGCATCATTCATTCCTGATTACTGTCGAGGAAGGATCTATTGGAGGATTCGGTTCTCATGTTGCACAGTTCATTGCACTTGATGGACTGCTTGATGGAAGCATTAAGTGGCGACCAATAGTCTTACCGGATAGTTACATTGAGCATGCATCACCAAACGAGCAGCTTCAGCAGGCGGGGTTAACCGGACATCACATTGCCGCCACAACATTGAGTCTGCTTGGCCGTACCCGCGAAGCTCTCCAATTCATGTGTTCTTGA 1830 0.4443 MSSTQIPLSASIAAVELTIAMHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMYTMRQKNGISGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDMKGRRERIVTVISNLTTMAGQVYEAMSNAGYLDSNLVVVLNDSRHSLLPKVDEGPKTSINALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGLIGPLGSTLFDELGLYYIGPVDGNNIEDLVCVLQEVASLDSMGPVLVHVITDDNQGVENNKRSDITDGQEDGSIKSNFLHYDVRQRTYGDCFVETLVSEAEKDKDIVVVNTGTMMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCVIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEIELVHMVATAIHVNDRPICFRYPRGALVGRDQTICDGVPIEIGEGRVLVEGKDVALLGYGSMVQNCLKAHTLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGSIKWRPIVLPDSYIEHASPNEQLQQAGLTGHHIAATTLSLLGRTREALQFMCS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g03437 609 SUPERFAMILY TK C-terminal domain-like 461 597 IPR009014 GO:0003824
Arst8g03437 609 Pfam Transketolase, pyrimidine binding domain 289 450 IPR005475 -
Arst8g03437 609 CDD TPP_DXS 8 258 IPR005477 GO:0008661|GO:0016114
Arst8g03437 609 Gene3D - 288 459 - -
Arst8g03437 609 SMART Transket_pyr_3 288 453 IPR005475 -
Arst8g03437 609 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 14 349 IPR029061 -
Arst8g03437 609 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 604 IPR005477 GO:0008661|GO:0016114
Arst8g03437 609 Gene3D - 1 262 - -
Arst8g03437 609 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 6 253 IPR005477 GO:0008661|GO:0016114
Arst8g03437 609 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 7 595 IPR005477 GO:0008661|GO:0016114
Arst8g03437 609 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 288 476 IPR029061 -
Arst8g03437 609 Gene3D - 466 597 IPR009014 GO:0003824
Arst8g03437 609 CDD TPP_PYR_DXS_TK_like 294 447 - -
Arst8g03437 609 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 466 598 - -
Arst8g03437 609 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 287 455 - -
Arst8g03437 609 Pfam Transketolase, C-terminal domain 466 589 IPR033248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g03437 Arst-Chr8 45235271 45240527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g03437 326 548 Acyl Lipid Metabolism Gene Families AT1G55510 24.691 2.38e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g03437 K01662 - gmx:100787937 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g03437 8 45235271 45240527 Arst8g03437 8 45235271 45240527 ECH