Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02543 ATGGCGAAGGTTTTTGGTTTGGGGAGTGAGCCAGTGGTGGGTTCACTAACTCCATCGAAGAAGAGAGATTACAGAGTCACCAACCGCCTCCAAGAGGGTAAACGCCCTCTATACGCCGTCGTTTTCAACTTCATCGATTCCCGCTACCTGAACGTTTTTGCCACTGTTGGCGGCAATAGGATTACGGTTTATCAGTGTCTTGAAGGAGGAGTTATTGCTGTTTTGCAATCTTATGTTGATGAGGATAAGGATGAATCCTTTTACACAGTGAGCTGGGCAAGCAATGTTGATGGTGCCCCATTTCTGGTGGCTGGAGGAATTAATGGCGTAATCCGAGTCATAGATACTGGTTCTGAGAGGATATACAAGAGCTTTGTTGGGCATGGAGACTCCATAAACGAAATCAGGACCCAAGCATTGAAGTCATCGCTTGTGATCTCTGCAAGCAAAGATGAATCTGTCCGGTTATGGAATGTTCATACTGGAATATGCATTCTGATATTTGCCGGGGCTGGAGGGCATCGTAATGAAGTTTTGAGCGTTGACTTTCATCCATCAGATATATACAAAATTGCTAGCTGTGGCATGGATAACACTGTAAAGATATGGTCGATGAAGGAGTTCTGGACCTACGTGGAAAAGTCATTCACATGGACAGATCTTCCATCTAAGTTTCCCACAAAATATGTGCAGTTTCCTGTATTCAATGCTTCAGTTCATTCAAATTATGTCGACTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAGAGTGTTGACAATGAAATTGTCTTGTGGGAGCCTAAAGTGAAGGAACAAACTCCAGGAGAGGGTGTAGTTGACATTCTCCAGAAATACCCTGTTCCTGAGTGTGATATCTGGTTCATCAAGTTTTCTTGTGATTTCCATTACAATCAAGCTGCAATAGGTAACAGGGAAGGGAAGATTTTTGTTTGGGAATTGCAGTCAAGTCCACCAGTTCTTATCGCAAGGTTGTCGCATCCTCAATCGAAATCTCCAATCCGGCAAACTGCCGTGTCTTTTGATGGAAGTATTATTTTGAGTTGCTGTGAGGACGGCACGATATGGCGCTGGGACGATGTTACAAACGTGCCACCAGCTTAG 1125 0.4409 MAKVFGLGSEPVVGSLTPSKKRDYRVTNRLQEGKRPLYAVVFNFIDSRYLNVFATVGGNRITVYQCLEGGVIAVLQSYVDEDKDESFYTVSWASNVDGAPFLVAGGINGVIRVIDTGSERIYKSFVGHGDSINEIRTQALKSSLVISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYKIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFNASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKVKEQTPGEGVVDILQKYPVPECDIWFIKFSCDFHYNQAAIGNREGKIFVWELQSSPPVLIARLSHPQSKSPIRQTAVSFDGSIILSCCEDGTIWRWDDVTNVPPA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02543 374 Pfam WD domain, G-beta repeat 123 158 IPR001680 GO:0005515
Arst8g02543 374 Pfam WD domain, G-beta repeat 339 366 IPR001680 GO:0005515
Arst8g02543 374 Pfam WD domain, G-beta repeat 172 204 IPR001680 GO:0005515
Arst8g02543 374 ProSitePatterns Trp-Asp (WD) repeats signature. 145 159 IPR019775 -
Arst8g02543 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 206 - -
Arst8g02543 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 162 - -
Arst8g02543 374 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Arst8g02543 374 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Arst8g02543 374 PRINTS G protein beta WD-40 repeat signature 145 159 IPR020472 -
Arst8g02543 374 FunFam polycomb group protein FIE1 20 369 - -
Arst8g02543 374 Gene3D - 20 369 IPR015943 GO:0005515
Arst8g02543 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 167 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 68 115 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 118 158 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 161 204 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 230 267 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 325 366 IPR001680 GO:0005515
Arst8g02543 374 SMART WD40_4 279 320 IPR001680 GO:0005515
Arst8g02543 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 206 IPR001680 GO:0005515
Arst8g02543 374 PANTHER POLYCOMB PROTEIN 7 369 - -
Arst8g02543 374 SUPERFAMILY WD40 repeat-like 28 366 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02543 Arst-Chr8 34749140 34752319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02543 101 208 Miscellaneous Gene Families AT5G08390 24.074 4.48e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02543 K11462 - gmx:100795288 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02543 8 34749140 34752319 Arst8g02543 8 34749140 34752319 ECH