Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01553 ATGTCGGTGATTTCATGCTTCTCTTTTGGCCGAACCAAAATCTTCAACTTTACGGCTTCAACAACTTCAAGATCCCTCTTTTCCTCAAAAACCAGCATACCTACCTCATCAACAGCCAAAAAAACTGTGCAACGTTCAGTTAAAATTGAACAACGCACGAAGTTTGGAATAACTGATATTGATGGATATCCGTACAAAGGAGCAAATAAATTGGTTCAACGCAGTGAACCACCACCCCATTGGGAAAAGGTGCTTGAAGGGATTCGCAAAATGATGAGTTTTTCTAAAGATGGACCAGTTGACTCAATGGAATCTGAAGAAGCTGCTGATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTCTTGGCATCTACTGTTTTATCAAGCCAAACTAAGGGGCATGTTTCTCAAGGAGCAACTAAACGTCTTCGGCTAAATGGTCTGCTTACTGCTGATACAATCAACAAAGCTGATGAAGAAACCATCAGAAAGTTGATTTACCCTGTTGGATTTTATAAGAGAAAAGCCAGCAACTTGAAAAAGATTGCAGATATTTGTCTCATGAAATATGATGGAGACATACCTAATTCAGTTGAGGAACTGCTCTTACTTCCAGGTGTAGGTCCTAAGATAGCTTATTTGGTTATGATTCTTGGATGGAACAACGTTCAAGGGATATGTGTCGATACTCATGTCCACCGCATTTGCAATCGCCTTGGATGGGTTTCCAGAGCAGGCACAAAGCAGAAAACATCAACACCGGAAGAAACAAGAAAGGCGTTGCAGCGTTGGCTCCCAAGAGAAGAATGGGTTCCAATAAATCCCCTTATGGTAGATTTTGGTCGAACAATTTGCACTCCTTTACGACCTCTTTGTGGAAAGTGTTGCATAAGTAGTCTGTGCCCATCAGCATTCACAGAGACTTCAAAGCCATCTTCCAAATCCAATAAGTCCGAACTGAAAAAGAGGCTTTAA 975 0.4123 MSVISCFSFGRTKIFNFTASTTSRSLFSSKTSIPTSSTAKKTVQRSVKIEQRTKFGITDIDGYPYKGANKLVQRSEPPPHWEKVLEGIRKMMSFSKDGPVDSMESEEAADTVPPKERRFAVLASTVLSSQTKGHVSQGATKRLRLNGLLTADTINKADEETIRKLIYPVGFYKRKASNLKKIADICLMKYDGDIPNSVEELLLLPGVGPKIAYLVMILGWNNVQGICVDTHVHRICNRLGWVSRAGTKQKTSTPEETRKALQRWLPREEWVPINPLMVDFGRTICTPLRPLCGKCCISSLCPSAFTETSKPSSKSNKSELKKRL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01553 324 FunFam Endonuclease III-like protein 1 114 218 - -
Arst8g01553 324 Pfam Helix-hairpin-helix motif 189 216 IPR000445 GO:0003677
Arst8g01553 324 SMART ccc3 284 304 IPR003651 GO:0051539
Arst8g01553 324 Pfam HhH-GPD superfamily base excision DNA repair protein 124 266 IPR003265 GO:0006284
Arst8g01553 324 Hamap Endonuclease III-like protein 1 [NTHL1]. 77 307 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Arst8g01553 324 CDD ENDO3c 119 281 IPR003265 GO:0006284
Arst8g01553 324 Gene3D Hypothetical protein; domain 2 107 218 - -
Arst8g01553 324 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 33 318 - -
Arst8g01553 324 MobiDBLite consensus disorder prediction 305 324 - -
Arst8g01553 324 SMART endo3end 127 283 IPR003265 GO:0006284
Arst8g01553 324 Gene3D - 219 306 IPR023170 -
Arst8g01553 324 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 285 301 IPR004035 -
Arst8g01553 324 SUPERFAMILY DNA-glycosylase 113 308 IPR011257 GO:0003824|GO:0006281
Arst8g01553 324 ProSitePatterns Endonuclease III family signature. 192 221 IPR004036 -
Arst8g01553 324 FunFam Endonuclease III homolog 217 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01553 Arst-Chr8 24479505 24482011 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01553 K10773 - qsu:111996257 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01553 8 24479505 24482011 Arst8g01553 8 24479505 24482011 ECH
Arst8g01553 8 24479505 24482011 Arst3g00481 3 3377683 3381942 PCT