Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01534 ATGCCAGCTATTTTGCTTCTATACAACATTCTAAATTCATTCCTTATTTCTCTCATTCCAAAGAAGCTAAGACCCTTCTTTCCCTTCTCTTGGTTCCCCCACCAAACAAACAACACTTCTTCTTCTTCTTCTTCCTCCTCTTCATCACCAAGAAGGGCCAGCAGGGCCATTATCATCACCAAGACAAGAATAATGGACCCAAATGAGCTCAGGAGAGTCTTCCAGATGTTCGACCGGAATGGAGACGGGAGAATCTCCAGGAGCGAGTTGACAGTCTCCCTGGAGAATCTCGGGATCTTCATTCCGGACAAGGAACTAGCTCAGATGATCGACAAGATTGATGCCAATGGGGATGGATTCGTGGATGTCGAAGAGTTTGGGGAGCTGTACGAATCTATAATGGTGGAACGTGGTGACGAGGAGGAAGACATGAAGGAAGCTTTCAACGTGTTTGACCAGAATGGAGATGGGTTCATCAGCGTGGAGGAGCTGAGGGCGGTCTTGTCTTCCTTGGGGCTTAAGCAAGGTAGAACCGATGAAGATTGCAAGAAGATGATAATGAAGGTGGACGCTGATGGTGATGGCATGGTTAACTACGGAGAATTCAAGCAAATGATGAAGGGTGGTGGATTCAGTGCTCTCAGTTAA 648 0.4676 MPAILLLYNILNSFLISLIPKKLRPFFPFSWFPHQTNNTSSSSSSSSSSPRRASRAIIITKTRIMDPNELRRVFQMFDRNGDGRISRSELTVSLENLGIFIPDKELAQMIDKIDANGDGFVDVEEFGELYESIMVERGDEEEDMKEAFNVFDQNGDGFISVEELRAVLSSLGLKQGRTDEDCKKMIMKVDADGDGMVNYGEFKQMMKGGGFSALS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01534 215 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Arst8g01534 215 Pfam EF-hand domain pair 69 130 IPR002048 GO:0005509
Arst8g01534 215 Pfam EF-hand domain pair 141 207 IPR002048 GO:0005509
Arst8g01534 215 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Arst8g01534 215 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Arst8g01534 215 FunFam Calmodulin 1 68 208 - -
Arst8g01534 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 141 207 - -
Arst8g01534 215 SUPERFAMILY EF-hand 68 209 IPR011992 -
Arst8g01534 215 Gene3D - 30 137 - -
Arst8g01534 215 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Arst8g01534 215 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Arst8g01534 215 Gene3D - 138 209 - -
Arst8g01534 215 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Arst8g01534 215 SMART efh_1 143 171 IPR002048 GO:0005509
Arst8g01534 215 SMART efh_1 69 97 IPR002048 GO:0005509
Arst8g01534 215 SMART efh_1 181 209 IPR002048 GO:0005509
Arst8g01534 215 SMART efh_1 105 133 IPR002048 GO:0005509
Arst8g01534 215 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Arst8g01534 215 CDD EFh 143 207 IPR002048 GO:0005509
Arst8g01534 215 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01534 Arst-Chr8 24432455 24433765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01534 1 213 EF-hand Containing Proteins AT2G43290 64.055 1.11e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01534 K13448 - qsa:O6P43_000072 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01534 8 24432455 24433765 Arst8g01534 8 24432455 24433765 ECH
Arst8g01534 8 24432455 24433765 Arst3g00500 3 3468987 3469998 PCT