Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01467 ATGTTTTCGGGGGTGACAAGTCTGGTGAACAGGGGACACAAGATTAAGGGCACGGTGGTGCTGATGCGCAAGAACGTCCTTGACGTCAACTCCCTTACCAGCGCTCAGGGACTCATCGGTCAAGGCGTCGGCCTCGTCGGCTCAACCATCGATAATCTCACTGCCTTCTTGGGCCGCTCTGTCTCCCTCCACCTCATTAGTGCCACCAAACCAGATGAGAATTGGAAGGGCAAAGTTGGAAAGAGTACGTTTTTGGAAGGTATAATATCTTCGTTGCCAACATTGGGAGCAGGGCAATCTGCCTTCACCATTCATTTCGAATGGGATGATGGTGAGATGGGAATTCCAGGAGCATTTTACATCAAGAATTTCATGCAAACCGAGTTCTTCCTCCTCACTTTGACTCTTGAAGACATTCCAAACCATCCAAATCTCAAAATCTACTTTGTTTGCAACTCCTGGATTTATAATGCTAAAAACTACAAAACCGATCGTATTTTCTTTTCCAACAAGACATATCTTCCAGGTGACACGCCAGCACCACTTGTAAAGTACAGGGAAGATGAATTGGAGAATTTAAGAGGAGATGGAAAAGGAGAGCGCAAAGAATATGATAGGATCTATGATTATGATGTTTACAATGATTTGGGGAATCCAGATAGCAATGAAAAATATGCTCGCCCTGTTCTTGGAGGATCTACTTTACCTTACCCTCGTAGAGGAAGAACAGGAAGGCCACCTACTAACAAAGATCCTAAGAGTGAGAAACGGAGCGATTTTGTTTACCTACCAAGGGACGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTAACTTATGGACTAAAATCTGTAGCCCAAGATGTGATGCCTGTTCTCACAGATGCATTTGATTAAATATCTTAACTCGAGTTTGATAATTTTGCTGAAGTGGATAAACTCTATACGGGTGGAATTACACTACCTACAAACTTTCTCAGCAAATTTTCCCCTTTGCCAGTACTCAAGGAAATTCTACGAACAGATGGTGAACAATTCCTTAAATATCCACCACCCAAAGTCATGCAAGTGAATAAATCTGCATGGATGACTGATGAAGAATTTTCTAGAGAAACACTTGCTGGTGTAAATCCTAATGTCATTAAGAGTCTTGAGGAGTTTCCACCAGGTAGCAAGCTAGATAGTAAAGTCTATGGTGATCATACTAGTACAATGAAAAAAGAACATTTAGAGCCTAACTTAGGAGGGCTTACTGTAAAACAGGCTATTGAGAAGAAGAAATTGTTCATTCTCGATCACCATGACTATCTGATTCCATATTTGAGAAGAATAAATTCAAGCAAGACAAAGGCCTATGCTACAAGGACTATTTTCTTCTTGAAAGATGATGGAACTTTAAAGCCACTGGCCATTGAGTTAAGCAAGCCACATCCTCAAGGAGAAGAGCATGGTCCTGTGAGTGATGTCTATCTACCAGCACATGAAGGAGTTGAAGGTTATATTTGGGTACTGGCCAAGGCATATGTTGTTGTAAATGACTCATGCTATCACCAACTTGTTAGTCATTGGTTAAACACTCATGCAGTTGTTGAACCATTTGTGATAGCAACAAATAGGCATCTGAGTGTGGTTCACCCAATTAATAAACTACTTTCCCCACACTACCGTGACACCATGAATATAAATTCACTTGCTCGGAAAGCCTTGATTAATGCAGATGGTATTATAGAACAAACATTCTTGTGGGGTAGATATGCTTTGGAAATGTCTGCTGTACTCTATAAGGATTGGGTTTTTCTAGATCAAGCATTACCTAATGATCTCATCAAGAGAGGAGTGGCAGTTAAGGATTCATCTTCTCCCCATGGTGTCCACCTTGTGATTGAGGATTACCCTTATGCTTCTGATGGATTAGAAATATGGGATGCTATTAAATCATGGGTTAAAGAGTATGTGTTCTTTTACTACAACTCAGATGATGCACTAAAACAAGACAATGAACTCCAAGAATGGTGGAAAGAGCTTGTAGAAGTAGGTCATGGTGACAAGAAGAATGAGACATGGTGGCCAAAGATGGAAACTCGAAACGAGTTGATTGAAGCTTCAACCACTCTCATATGGATTGCTTCAGCACTTCATGCAGCTATTAATTTTGGCCAATACCCTTATGGAGGTTACATTCTTAACCGTCCAACACTTAGCAGAAGATTCATGCCTGAGAAAGGGTCTCCTGAGTATGATGAATTGGCTAAGAATCATGAGAAGGAGTTCTTGAAAACAATCACAGGGAAGAAAGAGACACTAATTGATCTTACCGTTATTGAAATTTTGTCAAGGCATGCTTCTGATGAGTCCTACCTTGGACAAAGGGATGATGGTGACTTTTGGACTTGTGATACTGAGGCATTAGATGCCTTTAAGAGATTTGGAAAGAAACTTGCAGAGACTGAACAAAGATTGATGCAGAAGAACAATGATGGATCATTGAAAAATCGTTCTGGACCAGCTAAGATGCCTTACACTTTGCTTTATCCTTCTAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCAAATAGTATCTCTATCTAA 2589 0.4071 MFSGVTSLVNRGHKIKGTVVLMRKNVLDVNSLTSAQGLIGQGVGLVGSTIDNLTAFLGRSVSLHLISATKPDENWKGKVGKSTFLEGIISSLPTLGAGQSAFTIHFEWDDGEMGIPGAFYIKNFMQTEFFLLTLTLEDIPNHPNLKIYFVCNSWIYNAKNYKTDRIFFSNKTYLPGDTPAPLVKYREDELENLRGDGKGERKEYDRIYDYDVYNDLGNPDSNEKYARPVLGGSTLPYPRRGRTGRPPTNKDPKSEKRSDFVYLPRDEAFGHLKSSDFLTYGLKSVAQDVMPVLTDAFDXISXLEFDNFAEVDKLYTGGITLPTNFLSKFSPLPVLKEILRTDGEQFLKYPPPKVMQVNKSAWMTDEEFSRETLAGVNPNVIKSLEEFPPGSKLDSKVYGDHTSTMKKEHLEPNLGGLTVKQAIEKKKLFILDHHDYLIPYLRRINSSKTKAYATRTIFFLKDDGTLKPLAIELSKPHPQGEEHGPVSDVYLPAHEGVEGYIWVLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPINKLLSPHYRDTMNINSLARKALINADGIIEQTFLWGRYALEMSAVLYKDWVFLDQALPNDLIKRGVAVKDSSSPHGVHLVIEDYPYASDGLEIWDAIKSWVKEYVFFYYNSDDALKQDNELQEWWKELVEVGHGDKKNETWWPKMETRNELIEASTTLIWIASALHAAINFGQYPYGGYILNRPTLSRRFMPEKGSPEYDELAKNHEKEFLKTITGKKETLIDLTVIEILSRHASDESYLGQRDDGDFWTCDTEALDAFKRFGKKLAETEQRLMQKNNDGSLKNRSGPAKMPYTLLYPSSEEGLTFRGIPNSISI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01467 862 FunFam Lipoxygenase 174 272 - -
Arst8g01467 862 SMART LH2_4 13 170 IPR001024 GO:0005515
Arst8g01467 862 Gene3D - 174 272 - -
Arst8g01467 862 Gene3D - 361 494 - -
Arst8g01467 862 PANTHER LIPOXYGENASE 13 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Arst8g01467 862 PANTHER LIPOXYGENASE 13 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Arst8g01467 862 ProSiteProfiles PLAT domain profile. 39 169 IPR001024 GO:0005515
Arst8g01467 862 Gene3D - 495 861 - -
Arst8g01467 862 Pfam PLAT/LH2 domain 75 168 IPR001024 GO:0005515
Arst8g01467 862 SUPERFAMILY Lipoxigenase 175 862 IPR036226 -
Arst8g01467 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Arst8g01467 862 FunFam Lipoxygenase 361 494 - -
Arst8g01467 862 PRINTS Plant lipoxygenase signature 165 186 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 204 220 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 139 157 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 347 363 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 386 405 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 236 255 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Arst8g01467 862 PRINTS Plant lipoxygenase signature 302 323 IPR001246 GO:0016491
Arst8g01467 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 172 862 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 MobiDBLite consensus disorder prediction 219 257 - -
Arst8g01467 862 Gene3D PLAT/LH2 domain 4 173 - -
Arst8g01467 862 Gene3D - 273 360 IPR027433 -
Arst8g01467 862 CDD PLAT_LH2 13 170 IPR042057 -
Arst8g01467 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 173 IPR036392 GO:0005515
Arst8g01467 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Arst8g01467 862 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 Pfam Lipoxygenase 182 845 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 Pfam Lipoxygenase 182 845 IPR013819 GO:0016702|GO:0046872
Arst8g01467 862 FunFam Lipoxygenase 496 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01467 Arst-Chr8 23833532 23837810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01467 1 862 Acyl Lipid Metabolism Gene Families AT1G55020 56.413 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01467 K15718 - gmx:547860 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01467 8 23833532 23837810 Arst9g02482 9 90012507 90017523 PCT
Arst9g02479 9 90012507 90017523 Arst8g01467 8 23833532 23837810 PCT