Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01295 ATGCATACGTGGAAGCAGATCAGAGACAGGGAATTTGGTAATTTGCGCCCACATCGTTTCTCCAATCGGATCAAGTCCCGCCGCGTCTCCGACCTCGAATTGTCAAACCACAAAGACTTTCTCTCTCCTCACAAGGGCGCCCTGAACTCCCTTCAGGTTGATTTGACAGAGGGAAGATACTTGCTATCCGCTGCCGCAGATGCCTCCGTCGCCGTCTTCGACGTGCAGCGCCCCACCGAGTACGAAGCCGGTGGCCTCATATCCAAGCACCGCTGTCTGTTTCTCGTGGACAAGCAGCACCAGCTGGCGCACAAGTATGCTGTTTCCTCCGCCGTCTGGTACCCTGTGGACACTGGATTGTTCATCACTGGCTCCTTCGATCACCACATCAATGTCTGGGACACCAACACCACTCAGGTTGTGGTGAATTTCAAGATGCCTGGCAAGGTTTATCGGACTGCCATGTCCCCCTTGGCCACCTCTCACATGCTCGTCGCCGCCGCCACCGAGGATGTCCAAGTCCGCCTCTGTGATGTTGCTTCTGGTGCTTTTGCTCACACCTTGTCCGGCCACCGTGATGGAGTAATGAGTGTTGAATGGTCTACTTCAAGTGAATGGGTGTTGATGACTGGAGGATGCGATGGTGCGATACGTTTTTGGGATATTAGACGTGCTGGCTGTTTCCTTGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCATCCGTACTTAAACGCTCTATCACACACAAGGAGTCGAGTTTTAAGTCTTCCTCGGCTGGCCAAACAACAAGTGCAAAAGTTCGCGTTTCACAAAAGAAGCTTCCTAATGGGAATGGGAGCAGACAGGTTGTGATTGGTAGAGTTCCATCCAAGGGATCAATAAAGCAGAGATTACATCCAGGAATGCTGTCCACTCAGGATCGCGCAACAGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGATGATGGGTCTGATTCAAGACTAAGGTTGTGGGATATTGAATCTGGCTGTGACACGCTAGTGAACTTTGAAACCGTACGCCTGCAAACAAATAAACCAATTCAATTAGCCACCTCTCAGGATTCAACCCGCGTTTTTGTTCCATGCATGAGAACTGTGAAGGCATTTGACATGTGGTCTGGGAGCACGTCTGCAACATTTCGTGGCCACTATGAATGCGTGAACTCTTGCTGGTTTAATGAACAAGATCAGGAATTATACACTGGTGGGAATGATAGACAAATTCTTGTGTGGTCACCTGCTAGGTTAATTTCAGATGAAATGGAAGAAGGAATTGCTGAAGATCAGGACAGCTGGAGTAACTGA 1338 0.4948 MHTWKQIRDREFGNLRPHRFSNRIKSRRVSDLELSNHKDFLSPHKGALNSLQVDLTEGRYLLSAAADASVAVFDVQRPTEYEAGGLISKHRCLFLVDKQHQLAHKYAVSSAVWYPVDTGLFITGSFDHHINVWDTNTTQVVVNFKMPGKVYRTAMSPLATSHMLVAAATEDVQVRLCDVASGAFAHTLSGHRDGVMSVEWSTSSEWVLMTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPSVLKRSITHKESSFKSSSAGQTTSAKVRVSQKKLPNGNGSRQVVIGRVPSKGSIKQRLHPGMLSTQDRATAHYGAVTGLKVTDDGSDSRLRLWDIESGCDTLVNFETVRLQTNKPIQLATSQDSTRVFVPCMRTVKAFDMWSGSTSATFRGHYECVNSCWFNEQDQELYTGGNDRQILVWSPARLISDEMEEGIAEDQDSWSN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01295 445 SMART WD40_4 301 336 IPR001680 GO:0005515
Arst8g01295 445 SMART WD40_4 181 221 IPR001680 GO:0005515
Arst8g01295 445 SMART WD40_4 384 423 IPR001680 GO:0005515
Arst8g01295 445 SMART WD40_4 34 74 IPR001680 GO:0005515
Arst8g01295 445 SMART WD40_4 95 134 IPR001680 GO:0005515
Arst8g01295 445 MobiDBLite consensus disorder prediction 254 280 - -
Arst8g01295 445 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Arst8g01295 445 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Arst8g01295 445 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Arst8g01295 445 SUPERFAMILY WD40 repeat-like 40 424 IPR036322 GO:0005515
Arst8g01295 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 423 IPR001680 GO:0005515
Arst8g01295 445 Pfam WD domain, G-beta repeat 387 423 IPR001680 GO:0005515
Arst8g01295 445 Pfam WD domain, G-beta repeat 103 134 IPR001680 GO:0005515
Arst8g01295 445 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Arst8g01295 445 MobiDBLite consensus disorder prediction 249 283 - -
Arst8g01295 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 223 IPR001680 GO:0005515
Arst8g01295 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Arst8g01295 445 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Arst8g01295 445 Gene3D - 292 426 IPR015943 GO:0005515
Arst8g01295 445 Gene3D - 4 270 IPR015943 GO:0005515
Arst8g01295 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 423 - -
Arst8g01295 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Arst8g01295 445 FunFam Transducin/WD40 repeat-like superfamily protein 4 269 - -
Arst8g01295 445 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 444 IPR042238 GO:0006283
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01295 Arst-Chr8 17584858 17587462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01295 99 228 Miscellaneous Gene Families AT5G08390 26.923 3.46e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01295 K10570 - gmx:100790433 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01295 8 17584858 17587462 Arst8g01295 8 17584858 17587462 ECH