Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01111 ATGATAATTTTAAACTTTAAAATTAATCAGGGGTATCTTTCATGCATCCGTAACCCTAACGCCTTCCCTGACTCACTCACTAACTCACTAGAACACCACCGCCGTGTCACCACCGCCGTCGCAACTGCTCGGAGCCGCCTTCCCTGTTACGCTCTATTCCAGTATCCGCCACTGCTCAAAGCCGCCGTCTCCACTGCAAATCATCTCGCATCGTTCGTCCGTCGAGCAGCCGATGTTCCGCCGCGTTGGCTCTGTTCAACCACGCTCCAGCCCTTCTCTGCTTCAGTTCGGCCACGCTCAACCCTCCTCTGCTCCATTCCTGCCACGCTCCTCCTTCCTCTGCTCCAGTTCCGTCGCGCACCACCGCCCTCGGCCCCAGTTCCGCAGCGGTCCGGGCCACCTCTTCTCCAGTTCTGCCGCGTCCAGCCTTACGGTGCTCCCTCACCTCTATGCTCTAGAAGATGCACAAATCAAGTTCGATCAGGTGAAGTCAGAACAAGAATAATGAATCTGTTTCTGAAGAAATGGAACCTGTTCAGCACCTGTTCTTGGGTGGTTCAGAGGGCTATGCTGCACAACTCTCAAGCTCCAAGCGATCACCTTTTCCTTCGAATATCGAGAGCCGGACACCCCAACACTCCCATGAACCATATTCTGGATCAATGGGTCCAAGAGGGCGGACACGTCAGGCATTCCGAGCTCCAGTTCTTCATCAAGCAGCTTAGGTCTCATCGTCGCTTCAACCATGCCCTTCAGGTATTAGAATGGATGGGTGATGAAAGGAAACATCATTTGACATCTGGAGACATAGCTGTACGTCTTGACTTGATAGCAAAAGTTCATGGCTTAGTTCCAGCAGAGAAATACTTTAATAGCCTTTCAGATTCTGTAAAAGATTTCAAGGTCTATGGTGCTCTTTTGAACTGCTATGCACAACATAACTCTGTGGAGAAAGCAGAGGCTACCATGCAGAAACTAAAAGAGTATGCTTGTAAGCATACAATAAGTTTGGTATTGAGTTATAATGCTCTGTTAAAGCTCTATGTTCGAGTAAGTGAATTTGAGAAATTTGACAATTTGATGAGAGAAATGTTATCCAAGGACATGTATGACTCTGTGTCGCTTAATACTCGGCTGGATGCGTATGCGGCCATTAAGGACATAGATGGGATGGAGAGCTTACTATTGCGGATGGAAGCTGATTCTAAGGCAACTATTGATTGGATAACATACTCTATTGCAGCAAAGGCTTATATTCAGGCTGGCCAACATGAGAAAGCATATGCAATGCTGAGGAAATCGGAGGACCTCATTGAACCCAAGAGGAGGAGGGCTGCCTATGAATCTCTTCTAACTATGTACGGCTCCATGGGAAAAAAGGACGATGTTTATCGTATTTGGGATATGTGCAAAAGGTTAAACAGACCCTGCAACACGAATTACATCTGTATGCTGACCGCATTAGCTAGGCTTAATGATGTTGATGGAGCTGAGAGGATTTTTGAGGAATGGGAGTTTGGAAATACATGCTTCGACATCAGGATTCCGAATGTGATGATGAGTGCATATTGTAAGAATGGTCTGGTGGAAAAAGCTGAAGCATTTGTTGATAGGCTTTCAAAGAGTTGCAATGAATTAGGCGGTAGTATATGGGATCGATTAGCAAATGGCTATTACAGGAACAATGATATGGATAATGCTATTCAAACAATGAAGAAAGCGATTTTGGCAGGTCAACCTGGATCAACATGGAAGCCCTATCGATTTACTTTGGCTACATGTATTGATTACCTTAAGGACAAGGGAGATTTGGAGGGGGCATCAGAGATTCTTAGGCTATGTCTTGAACGAGAATATTTTTCTACTGTTATACATGATAGATTATCAAGCTATGTGCATGGAAAAACCCCAGAAACAAAGGCCATAAATCTGATGGAAGAATATTATCATTCAAAGAATGAACTTTTTCCAGATGGAGAGAAGCAACATGAAATTCAACTCCATGAATAG 2010 0.4507 MIILNFKINQGYLSCIRNPNAFPDSLTNSLEHHRRVTTAVATARSRLPCYALFQYPPLLKAAVSTANHLASFVRRAADVPPRWLCSTTLQPFSASVRPRSTLLCSIPATLLLPLLQFRRAPPPSAPVPQRSGPPLLQFCRVQPYGAPSPLCSRRCTNQVRSGEVRTRIMNLFLKKWNLFSTCSWVVQRAMLHNSQAPSDHLFLRISRAGHPNTPMNHILDQWVQEGGHVRHSELQFFIKQLRSHRRFNHALQVLEWMGDERKHHLTSGDIAVRLDLIAKVHGLVPAEKYFNSLSDSVKDFKVYGALLNCYAQHNSVEKAEATMQKLKEYACKHTISLVLSYNALLKLYVRVSEFEKFDNLMREMLSKDMYDSVSLNTRLDAYAAIKDIDGMESLLLRMEADSKATIDWITYSIAAKAYIQAGQHEKAYAMLRKSEDLIEPKRRRAAYESLLTMYGSMGKKDDVYRIWDMCKRLNRPCNTNYICMLTALARLNDVDGAERIFEEWEFGNTCFDIRIPNVMMSAYCKNGLVEKAEAFVDRLSKSCNELGGSIWDRLANGYYRNNDMDNAIQTMKKAILAGQPGSTWKPYRFTLATCIDYLKDKGDLEGASEILRLCLEREYFSTVIHDRLSSYVHGKTPETKAINLMEEYYHSKNELFPDGEKQHEIQLHE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01111 669 Gene3D Tetratricopeptide repeat domain 204 369 IPR011990 GO:0005515
Arst8g01111 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 542 IPR002885 -
Arst8g01111 669 Pfam PPR repeat 302 328 IPR002885 -
Arst8g01111 669 Pfam PPR repeat 517 540 IPR002885 -
Arst8g01111 669 Pfam PPR repeat 409 433 IPR002885 -
Arst8g01111 669 Pfam PPR repeat 340 368 IPR002885 -
Arst8g01111 669 Pfam PPR repeat 481 504 IPR002885 -
Arst8g01111 669 Gene3D Tetratricopeptide repeat domain 474 614 IPR011990 GO:0005515
Arst8g01111 669 Gene3D Tetratricopeptide repeat domain 371 473 IPR011990 GO:0005515
Arst8g01111 669 SUPERFAMILY TPR-like 410 575 IPR011990 GO:0005515
Arst8g01111 669 PANTHER OS12G0527900 PROTEIN 189 645 - -
Arst8g01111 669 NCBIfam pentatricopeptide repeat 517 541 IPR002885 -
Arst8g01111 669 NCBIfam pentatricopeptide repeat 340 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01111 Arst-Chr8 15395663 15399509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01111 201 613 EF-hand Containing Proteins AT1G02150 33.014 1.90e-72 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01111 - - adu:107461091 1366.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01111 8 15395663 15399509 Arst8g01111 8 15395663 15399509 ECH