Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01084 ATGGATTTGGTGGCACCACACGAACAGTTCTTCTCTTTTCACAACTTGCACAGAGAACTCACAAACTTCAAAGGTAGGGTTTTGGACAATAATACCCTTTCTCGCCCTTCTATTAATTTTGCAAAACTCAACTGCATCATTAAGCTTAGAAGAAGAAACCGTTATAGTAATAACCGCATTCTCGCGGTTTCGAACGGTAAACTGCACCATTTTGGTGGTGGAAGATCAGTGGCGCCGCCGAACGGTGAATCGAACGGAACGGTGGAAGCTTGTAGAACATTGGAGGAGTTTGAGAACAACCAGTACCTGAGGAAGCTTGTGAGGAACGGGGAATTAGATGAAGGACTTAGGTTTCTTGAGCGCATGGCTTACCAGGGTGATATCCCTGATGTAATTGCCTGCACCACTTTGATTCGAGGGTTCTGCCGAGCTCGGAGGACCAAGAAGGCGACGAGGATCCTCGAGATACTCGAGGATTCCGGCGCCGTCCCTGATGTTATAACTTACAATGTGTTGATTAGTGGTTACTGTAAGTCAGGGGAGATAGATAAGGCACTCCAGGTGCTCGAGAGAATGAGCGTGGCGCCGGATGTGGTTACTTATAACACCATTTTGCGTAGTTTGTGTGATGGTGGGAAATTGAAGCAGGCAATGGAAGTTCTAGATAGGCAGTTGCAGAGGGAGTGTTATCCGGATGTGATAACTTACACGATTTTGATCGAAGCGACTTGTAAAGAATGTGGCGTTGGCCAGGCGATGAAATTGTTGGACGAGATGAGGAGCAGAGGATGCAAACCGGATGTTGTCACGTTTAATGTTCTTATCAATGGGATTTGTAAGGAAGGCAGGTTGGACGAGGCGATTAAGTTCTTGAATAACATGCCATCATATGGTTGCCAACCGAATGTGATTACTCATAACATTATTTTGCGGAGCATGTGTAGCACCGGCCGATGGATGGATGCGGAGAGGCTGTTATCCGACATGCTTCGCAAGGGTTGCGCCCCTAGTGTTGTTACTTTTAATATTTTGATCAACTTCTTGTGCCGGAAAGGATTGTTGGGTAGGGCGATCGATATCTTGGAGAAGATGCCAAAGCATGGTTGTATTCCGAATTCCTTGAGTTACAATCCATTGCTTCATGGGTTTTGTAAAGAAAAGAAGATGGATAGAGCAATTCAGTACTTGGAACTAATGGTCTCTAGGGGTTGTTATCCTGATATAGTGACATATAATACTTTACTCACAGCATTATGCAAAGATGGGAAGGTGGATGTTGCTGTCGAGATACTGAATCAACTTAGTCACAAAGGGTGCTCTCCTGTTTTGATTACTTACAATACGGTTATTGATGGCCTTTCGAAGGCCGGGAAAACGGAGTTGGCTGTGGAACTCTTGGAAGAGATGTGCAGAAAAGGTCTTAAACCCGATATAATTACTTACTCTTCACTGCTCGGAGGTCTCAGCCGTGAAGGGAAGGTAGAAGAGGCTATCAAAATTTTCCGGGACTTGGAGAGATTAGGTATTAGGCCGAATGCTATTACTTACAATTCGGTCATGTTGGGGCTATGCAAGGTTCAACAAACTAGTCGCGCTATCGATTTTCTGGCTTATATGGTAGAGAGAGGATGCAAACCTACTGAAACTACATATACAATTCTTATAGAGGGCATTGCTTATGAAGGATTAGCTGACGAAGCTTTGGAGTTGTTGAATGAGTTGTGTTCCAGAGGATTGGTTAAGAAAAGTTCGGTTGAAAAGATTTTGTTAGCCCCTTCATGTTAG 1785 0.4437 MDLVAPHEQFFSFHNLHRELTNFKGRVLDNNTLSRPSINFAKLNCIIKLRRRNRYSNNRILAVSNGKLHHFGGGRSVAPPNGESNGTVEACRTLEEFENNQYLRKLVRNGELDEGLRFLERMAYQGDIPDVIACTTLIRGFCRARRTKKATRILEILEDSGAVPDVITYNVLISGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDGGKLKQAMEVLDRQLQRECYPDVITYTILIEATCKECGVGQAMKLLDEMRSRGCKPDVVTFNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCAPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCIPNSLSYNPLLHGFCKEKKMDRAIQYLELMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSHKGCSPVLITYNTVIDGLSKAGKTELAVELLEEMCRKGLKPDIITYSSLLGGLSREGKVEEAIKIFRDLERLGIRPNAITYNSVMLGLCKVQQTSRAIDFLAYMVERGCKPTETTYTILIEGIAYEGLADEALELLNELCSRGLVKKSSVEKILLAPSC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01084 594 FunFam Pentatricopeptide repeat-containing protein At1g09900 59 222 - -
Arst8g01084 594 FunFam Pentatricopeptide repeat-containing protein At1g09900 367 457 - -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Arst8g01084 594 FunFam Pentatricopeptide repeat-containing protein At1g09900 296 365 - -
Arst8g01084 594 SUPERFAMILY HCP-like 356 547 - -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Arst8g01084 594 Pfam PPR repeat 332 364 IPR002885 -
Arst8g01084 594 Pfam PPR repeat 161 193 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 339 372 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 444 478 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 199 233 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 269 303 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 479 513 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 375 408 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 304 337 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 133 166 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 550 580 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 514 548 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 409 441 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 167 193 IPR002885 -
Arst8g01084 594 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Arst8g01084 594 FunFam Pentatricopeptide repeat-containing protein At1g09900 225 295 - -
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 295 365 IPR011990 GO:0005515
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 436 505 IPR011990 GO:0005515
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 506 576 IPR011990 GO:0005515
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 224 294 IPR011990 GO:0005515
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 366 435 IPR011990 GO:0005515
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Arst8g01084 594 Gene3D Tetratricopeptide repeat domain 75 223 IPR011990 GO:0005515
Arst8g01084 594 PANTHER ATPASE EXPRESSION PROTEIN 3 38 540 - -
Arst8g01084 594 Pfam PPR repeat family 371 420 IPR002885 -
Arst8g01084 594 Pfam PPR repeat family 444 489 IPR002885 -
Arst8g01084 594 Pfam PPR repeat family 511 558 IPR002885 -
Arst8g01084 594 Pfam PPR repeat family 196 245 IPR002885 -
Arst8g01084 594 Pfam PPR repeat family 266 315 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Arst8g01084 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01084 Arst-Chr8 14994140 14996449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01084 141 594 Glycosyltransferase AT1G05670 27.309 3.65e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01084 - - gmx:100791459 912.909