Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00890 ATGTTAAGAGCCTCAGAAAAACCAAACGCAGTGATGGCGCACTTACCCGCCCTCCGGGTTCTCCTTCGCCACATTAACTGCCTCATTCCGCCACCGCGCACATCTATGCCTGCACTCTGTACCATCCGTGCCACGTGTCACTTCCTCCTTCTCTCCCCTAAACCTCGCAAACTCCACGCCACCGCAACTTCCAAAGGTCCAGAGAACCACGCGCTGCTGCTCAACAGAGACGAGCGCGTGGCGAGAAACGTTACTCCAAGCGATGTAGTTGAGAAAGGGAGCACAATCGCGGCGATAGTAACGTCGTTGGGAGGTCCACGCCACGTGGTGGAGTACGGAGTCGTTTTGGATTCGGAGGGGAATGTGATCGATGAGGTTTTGGCGGTGCCGATGCTGGCGCCAAAATCTTACACGCGCGAGGACGTTGTTGAGATTCAGTGTCATGGAAGTGAAGTGTGTCTGCGCCGAGTTCTCAGAACTTGCTTGGAAGCTGGAGCTACACTTGCTCAGCCAGGAGAGTTTACACTTCGTGCGTTTCTAAATGGTCGGTTGGATCTATCACAAGCTGAGAATGTTGGAAGGTTGATTACCGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCCGGAATCCAGGCATGTCTAACTCGAATTTGGTTTGATTTGATTTTGCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTAGATTTTGAGGATGAGATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTATGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGCGATGTGATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACTGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTAGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG 1584 0.4703 MLRASEKPNAVMAHLPALRVLLRHINCLIPPPRTSMPALCTIRATCHFLLLSPKPRKLHATATSKGPENHALLLNRDERVARNVTPSDVVEKGSTIAAIVTSLGGPPXHVVEYGVVLDSEGNVIDEVLAVPMLAPKSYTREDVVEIQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQACLTRIWFDLILQCIELLTEIEARLDFEDEMPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00890 528 Gene3D Probable tRNA modification gtpase trme; domain 1 78 184 IPR027266 GO:0005515
Arst8g00890 528 Coils Coil 467 487 - -
Arst8g00890 528 Pfam GTP-binding protein TrmE N-terminus 104 184 IPR018948 -
Arst8g00890 528 Pfam 50S ribosome-binding GTPase 281 402 IPR006073 GO:0005525
Arst8g00890 528 Gene3D tRNA modification GTPase MnmE domain 2 185 528 IPR027368 -
Arst8g00890 528 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 279 449 IPR031168 -
Arst8g00890 528 NCBIfam small GTP-binding protein domain 280 407 IPR005225 GO:0005525
Arst8g00890 528 FunFam tRNA modification GTPase MnmE 280 456 - -
Arst8g00890 528 Hamap tRNA modification GTPase MnmE [mnmE]. 56 528 IPR004520 GO:0003924|GO:0005525|GO:0006400
Arst8g00890 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 444 IPR027417 -
Arst8g00890 528 Pfam MnmE helical domain 187 525 IPR025867 -
Arst8g00890 528 Gene3D - 280 456 IPR027417 -
Arst8g00890 528 PANTHER TRNA MODIFICATION GTPASE GTPBP3 102 528 - -
Arst8g00890 528 CDD trmE 277 449 IPR031168 -
Arst8g00890 528 CDD TrmE_N 94 183 IPR018948 -
Arst8g00890 528 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 108 528 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00890 Arst-Chr8 12222705 12226492 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00890 K03650 - gmx:100818096 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00890 8 12222705 12226492 Arst8g00890 8 12222705 12226492 ECH