Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00816 ATGGATATAAACAGAATCCAATTAGCTCTGCGCTCTTGTGGGATCTTTCAATCTATCAAACACGCCAAATCACTTCACTCTTGCATCATAAAACTTGGCTTTCTGAATCATGTTTTCCTCGTAAACAACATGATCTCTGTCTATGCAAAGTGTCTCCATGTATATGATGCGCGAAACCTGTTTGACGAAATGCCTCACAGAAACATCGTTACTTGGACCACAATGCTCTCTGCATACACCAATTCTGGGAGTCCCCACGTGGCCCTTTCGCTTTACAATCAGATGCTGCAATCTGAAACAGAGGAGCCCAATGGGTTCGTGTACTCTGCGGTTCTCAAGGCGTGTGGTCTAGTGGGTGATGTTGAACTGGGTAGGTTTGTTCACCAGCATGTAGCTCAGGCAAAAATGGAATTTGACACTGTTCTGATGAATGCACTTTTGGACATGTATGTCAAATGTGGGAGCTTGAAGGATGCAAAGCGAGTTTTTTATGAGACCCCACTTAAGAATTCGACTTCATGGAACACGCTCATTCTGGGTCATGCTAAAAGTGGCTTGGTGGGCGATGCTCTGAAGCTGTTTGATCAAATGCCGGAACGTGATATTGTTTCTTGGAATAGCATCGTTGCTGGTCTAGCAAGTACTGGAAGCCCCCATGCATTACAGTTTGTTGCTAGGATGCACGTGCTAGGCTTTAAACTAGATGAGTTCACATTCCCACGCGCTCTCAAAATTTGCGGTCATGTTGGTGAAATAGCAACGGGGAAACAAATTCATTGTTATGTTATCAAGTCAGGGTTTGAGTCTTGCAGTTACTGTATATCAGCGTTGATTGATATGTATTCCAATTGCAAGTTATTGGATGAAGCAATGTTGATCTTTGATCAGTTCTTCGACAATTCTTTTGTTGTCGAAAGCTTGGCAATTTGGAATTGTATGCTTTCTGGGTATGTTGTCAATGGGGATTATGGAAAGGCTCTTAGTCTGATTGCACATATCCATAAAACTGGTGCATATTTCGATTCTTATACCTTTAGTATTGCTTTAAAGGTTTGTATGTACTTCCAGAACTTGAGGTTGATATCTCAGGTGCATAGTTTGGTCATCACAAGTGGCTATGAGTTAGATTGCGTTATTGGAAGCATTCTTATTGATCTCTATGCGAACCAGGGGAATATTAATATTGCTTTGAGATTGTTTGAAAAGTTGCCAGAAAAAGATGTTGTGGCTTGGTCTAGTGTGATTGCTGCTTGTGCTAGATCTGGCTTAGATTCATTGGCTTTATCCCTCTTTATGAATATGACTCGTATGGATCTTGAGATTGACCATTTTATCCTTACAGTTGTTCTTAAAGTTTGTTCAACCTTGGCATCTCAGAGAATTGGAAAGCAAATTCATGCTAACTGTCTTAAAAAGGGATATGAATCAGAGGGAGTTATTGCAACTGCTCTTATTGATATGTACTCAAAATGTGGTGACATTGACGATGCCTTAGCGTTGTTTGGCTGTCTTTCAGAAAGAGACACTATGTGTTGGACAGGGATTATTGTTGGATGTGCACAAAATGGAAGAGTAGACGAGGCAATCAATCTTCTGCATGAGATGATAGAATCTGGTGAAAAGCCAAATGAAATCACCATTCTAGGTGCTCTTACGGCTTGTAGGCATGGTGGCCTAGTTGAAGAGGCATGGGCCATATTTGATTCTGTTGAAACAGACCATGGATTGAAAAGGTGCCTAGGGCATTACAGTTGTATGGTTGATCTACTTGGTCAAGCAGGACGCTTCGAAGAAGCACTAAAATTGATTAGTGACATGCCATTTAAGCCTGACAAGACGATATGGTTCTCCTTGCTTGGCGCTTGTGGAACTCACAAGAACCAGTATCTTGCTAATGTTGTTGCTGAGCATCTTCGTGCTACATTTCCAGAAGATGCTTCTGTATATGTAATGCTGTCAAACGTTTATGCAACTCTTGGAATGTGGGATAGTTTAAGCGAAGCAAGGGAAGCCTTGAAAAAAGTAGGCTTAAAAGGAGCTGGTAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.4135 MDINRIQLALRSCGIFQSIKHAKSLHSCIIKLGFLNHVFLVNNMISVYAKCLHVYDARNLFDEMPHRNIVTWTTMLSAYTNSGSPHVALSLYNQMLQSETEEPNGFVYSAVLKACGLVGDVELGRFVHQHVAQAKMEFDTVLMNALLDMYVKCGSLKDAKRVFYETPLKNSTSWNTLILGHAKSGLVGDALKLFDQMPERDIVSWNSIVAGLASTGSPHALQFVARMHVLGFKLDEFTFPRALKICGHVGEIATGKQIHCYVIKSGFESCSYCISALIDMYSNCKLLDEAMLIFDQFFDNSFVVESLAIWNCMLSGYVVNGDYGKALSLIAHIHKTGAYFDSYTFSIALKVCMYFQNLRLISQVHSLVITSGYELDCVIGSILIDLYANQGNINIALRLFEKLPEKDVVAWSSVIAACARSGLDSLALSLFMNMTRMDLEIDHFILTVVLKVCSTLASQRIGKQIHANCLKKGYESEGVIATALIDMYSKCGDIDDALALFGCLSERDTMCWTGIIVGCAQNGRVDEAINLLHEMIESGEKPNEITILGALTACRHGGLVEEAWAIFDSVETDHGLKRCLGHYSCMVDLLGQAGRFEEALKLISDMPFKPDKTIWFSLLGACGTHKNQYLANVVAEHLRATFPEDASVYVMLSNVYATLGMWDSLSEAREALKKVGLKGAGKSWIEISS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00816 689 Gene3D Tetratricopeptide repeat domain 217 358 IPR011990 GO:0005515
Arst8g00816 689 Gene3D Tetratricopeptide repeat domain 481 689 IPR011990 GO:0005515
Arst8g00816 689 Pfam PPR repeat family 67 115 IPR002885 -
Arst8g00816 689 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 360 460 - -
Arst8g00816 689 FunFam Pentatricopeptide repeat-containing protein At4g08210 558 687 - -
Arst8g00816 689 FunFam Pentatricopeptide repeat-containing protein chloroplastic 462 557 - -
Arst8g00816 689 Gene3D Tetratricopeptide repeat domain 123 199 IPR011990 GO:0005515
Arst8g00816 689 Gene3D Tetratricopeptide repeat domain 359 466 IPR011990 GO:0005515
Arst8g00816 689 Gene3D Tetratricopeptide repeat domain 3 122 IPR011990 GO:0005515
Arst8g00816 689 SUPERFAMILY TPR-like 465 662 IPR011990 GO:0005515
Arst8g00816 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Arst8g00816 689 Pfam E motif 625 686 IPR046848 -
Arst8g00816 689 NCBIfam pentatricopeptide repeat 309 337 IPR002885 -
Arst8g00816 689 NCBIfam pentatricopeptide repeat 511 544 IPR002885 -
Arst8g00816 689 NCBIfam pentatricopeptide repeat 70 98 IPR002885 -
Arst8g00816 689 NCBIfam pentatricopeptide repeat 583 606 IPR002885 -
Arst8g00816 689 NCBIfam pentatricopeptide repeat 173 203 IPR002885 -
Arst8g00816 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Arst8g00816 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 182 687 IPR046960 GO:0003723|GO:0009451
Arst8g00816 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Arst8g00816 689 FunFam Pentatricopeptide repeat-containing protein At3g49710 120 253 - -
Arst8g00816 689 FunFam Pentatricopeptide repeat-containing protein 19 119 - -
Arst8g00816 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 511 539 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 275 296 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 381 407 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 173 202 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 309 330 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 482 506 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 409 437 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 583 606 IPR002885 -
Arst8g00816 689 Pfam PPR repeat 142 165 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00816 Arst-Chr8 11288071 11294678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g00816 1 687 Glycoside Hydrolase AT3G49170 30.086 3.77e-106 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00816 - - gmx:100780678 1033.09