LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst8g00806	ATGAAAGCCGCAACTGAACAATCCACTGTTGAGGGCTTTGATAATAATAATAATAATAATAATATTAATAATAATGTGGAAAAGGAGAAGAAGAAGAAACGACGTTCCAATCGTCGTTCCAAACAAAACCCTACTTCCTCCTCAGCGAACGAGATCTGTAGCGTATCGTCGGAATTCTTTGGTGACGGCACTGCGGCGCCTACTCCGACGGCTTCCCCAATGAAGCAGCAAGGTGACAATGCTCCTTACTGTTACGATCATCAACACGATGATACAACTTTGGTTTCGATTCCGGCAGCGGCAGCCCCAATGCATATCAACGAGCAATCGCCGCCGCAATTCGTCGATGCGCAAACACAAGATTCATGGAATGGTTGGAACGGAGATTTGGTCCCTTCTCCCCCTCAGATAGGGTTTTGCCCCCAAAGGTGTTATTTTAGTCCACACTGGCCCATGGAAGCTGTTGAGATGGCACTCGAGAAGGGTGATGTTTTTAAAGCTTCCTTTCGAGTGAATGCTCACAACAGACTTGAGGCATACTGCAAAGTTGACGGATTGCCAACAGATGTACTCATTAGCGGAATTCCAGCCCAGAACAGAGCTGTGGAAGGTGACATTGTTGCTATTACAATGGATTCATTCTCATCGTGGACAAAAATGAAAGGATCTAACAGAACTTGCAACAATTATGCAACACCAGAAGATTGTAGCCTCCTCACAGAAGCTGATGATGTGGCTGGCAATATCTATAAAGGAAAAGGCGAGTTAGATAAAGATAAAGATACCAATTATGACTCTGCTGATTGCAGAAACCGCCCTAGTCAAAACCAGGAGGATACTGAGGTCTATCCCAACCCTAATGATAGTTGTCATTTTCCTGAAAAGAAGTATGCCTATGAAGATAGTGGTTCCCTGGGTCCAGTTTCACATTTAGATCCAGTTAGACCTGCCAATGATAGTTTTGATGGGCAGAACAATGCTGCTTTTGAATCTTTGAATATGAGTTCTTGTAGCAAACAAATTGAAGTAATCAGTGCAGTGCAAAAGATGTGCTCCTTAGTTAATGCTTTCCCTTCCAAAAGACCAACTGCCAGGGTGGTTGCTATAATTGAGAAGTCTCCACGTCGAGAGCGCATTGTAGGTCAACTCAATGTGAAGCAGTGGATATCTGTCAAGGGTGTAAGCAGAAAAGATGCAAAGAAAAATAAGAATCTGGTTTCTGATAATGAGTACATCCAGTTGACACCAATTGATCCAAAATTTCCTAAAATGATGCTTTTTGTTAGAGATTTGCCAGAACACATTAAGAAAAGACTACAAAGTGGTGATGTGACAACTGAAATGGATCTGATAGCAGCACAACTTTATGATTGGGGGGAAGAGAGTCTTTTTCCCAGAGCTCACATCTTGCATGTGTTTGGAAAAGGTAGCAAAGTTCAGACACATTTAGACGCAATTCTGTTTCAGAATACGATTTGTGAGTCTGAATTTTCACCTGAAGCTATGACTTGCCTACCATGTTTTCCATGGGAGGTGCCAGAAAAGGAATTGCAGAGTAGACTGGATCTTAGAAATCTCTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCGATTGAGAAGTTACCTAATGGAAATTGTAGAGTAGGTGTCCACATTGCCGATGTATCATACTTTGTTTTACCAGGCACTGTCTTAGATGACGAGGCTCAGTTTAGGTCAACAACTGTCTATATGTTGCAAAAAAAGATACCAATGTTACCCGCATTATTTTCAGACAATATAGGCTCACTTAATCCTGGAGTGGATCGAGTGGCGGTTTCAATGCTCCTTGACATCAATCCTGCTGGGGATGTTGTGAACCGTTGGATTGGTCGTAGTGTTATCCAGTCTTGTTGTAAGCTTTCATACGAACTTGCTCAGAATATTATTGATGGGGCAGTTGATTTTGAAAGTTCAAACATCATAGGAGAGAGCTACCCAAAGGTGCATGGTCAATTTGGATGGCCTGACATTATTACTTCTGTGAAGAGCTTATGTGAAATTTCAAATGTTTTGAAACAAAAGAGGTTCAATGATGGGGCTCTAAGGCTTGAAAATCCTAAAGTTGCTTTCCTGTTTGATGAGTATGGACTTCCTTATGACCTTATACTTTCTGAACGGAAAGAATCAAATTTTCTTGTTGAGGAATTTATGCTTTTGGCCAATACAACAGCTGCTGAAGTCATTTGTAGAGTTTATCCTGATAATGCATTATTGCGAAGGCATCCTGAACCTAATATGCGAAAACTGAGAGATTTTGTGGCATTCTGTCAGAAGCATGGTTTAAAATTGGACACATCTTCGTCTGGCCAGTTCCATCGGTCACTAGAGCTGATTAAGGAAAAGCTGAAGGATGACTCTGTGCTCTTTGATATTCTTATTTCCTATGCGACAAGACCAATGCAGTTGGCATGTTACTTCTGTAGTGGTCAGTTAAAGGAAAGGAAGCATGAGTGGGGTCATTATGCATTAGCTGTTCCTTTTTACACTCACTTTACATCACCACTGCGGCGGTATCCTGATATTGTTGTTCATAGGACACTACTTGCTGCTTTGGAGGCTGAGGAATTATATCTAAAGCATCGTAAGGCATTGCTAGTTAACAAGGAAGAGGAATTGCAGCGATGTTTCACAGGCATTATCTTTGATAAGAATGCTGCAGAATCTGTGGAAGGCAGGGAAGCTCTATCAGCTGCAGCTTCAAAACATGGAGTCCCATCCACAGAAATACTTGCAGATGTTGCTGCTTATTGCAATGAGAGAAAACTAGCCAGTCGAAATGTTAAAGATGCTTGTGATAAACTTTACATGTGGCATTTCTTGAAGAAGGAGATCTTATTGTCTGAAGCAAGGGTTCTGGGACTGGGCCCAAGATTCATGTCAATCTATATTCAGAAGCTAGCTATTGAGCAACGCATCTATTATGATGAAGTTGAAGGGTTATCAGTGGAGTGGCTCGAAGCAACATCATCGGTGGTGCTAAGTATGTCTGCTCATAGGCGTGCATTCCGGAGGGGTAGCCATAATAAATGGAGGGCGTTTGAAGAAGTTGCTTTCGTGGTTGATCCATATGACCTGAAAGTTGCATTGGATGGTTCTGATGGATGTGAGAACAGGGATCCCAATTCGAGGACCGAAATTGACCCTGCAGTTTTCCCTCTCACGGTACATCTTCTCTCAACAATTCCGGTGGTACTCCATGCTGTTGGTGGTGATGATGGACCCCTTGAAATTGGGGTGAGGCTGTACATGAGCTCGTATTACGGGTAA	3330	0.4228	MKAATEQSTVEGFDNNNNNNNINNNVEKEKKKKRRSNRRSKQNPTSSSANEICSVSSEFFGDGTAAPTPTASPMKQQGDNAPYCYDHQHDDTTLVSIPAAAAPMHINEQSPPQFVDAQTQDSWNGWNGDLVPSPPQIGFCPQRCYFSPHWPMEAVEMALEKGDVFKASFRVNAHNRLEAYCKVDGLPTDVLISGIPAQNRAVEGDIVAITMDSFSSWTKMKGSNRTCNNYATPEDCSLLTEADDVAGNIYKGKGELDKDKDTNYDSADCRNRPSQNQEDTEVYPNPNDSCHFPEKKYAYEDSGSLGPVSHLDPVRPANDSFDGQNNAAFESLNMSSCSKQIEVISAVQKMCSLVNAFPSKRPTARVVAIIEKSPRRERIVGQLNVKQWISVKGVSRKDAKKNKNLVSDNEYIQLTPIDPKFPKMMLFVRDLPEHIKKRLQSGDVTTEMDLIAAQLYDWGEESLFPRAHILHVFGKGSKVQTHLDAILFQNTICESEFSPEAMTCLPCFPWEVPEKELQSRLDLRNLCIFTIDPSTATDLDDALSIEKLPNGNCRVGVHIADVSYFVLPGTVLDDEAQFRSTTVYMLQKKIPMLPALFSDNIGSLNPGVDRVAVSMLLDINPAGDVVNRWIGRSVIQSCCKLSYELAQNIIDGAVDFESSNIIGESYPKVHGQFGWPDIITSVKSLCEISNVLKQKRFNDGALRLENPKVAFLFDEYGLPYDLILSERKESNFLVEEFMLLANTTAAEVICRVYPDNALLRRHPEPNMRKLRDFVAFCQKHGLKLDTSSSGQFHRSLELIKEKLKDDSVLFDILISYATRPMQLACYFCSGQLKERKHEWGHYALAVPFYTHFTSPLRRYPDIVVHRTLLAALEAEELYLKHRKALLVNKEEELQRCFTGIIFDKNAAESVEGREALSAAASKHGVPSTEILADVAAYCNERKLASRNVKDACDKLYMWHFLKKEILLSEARVLGLGPRFMSIYIQKLAIEQRIYYDEVEGLSVEWLEATSSVVLSMSAHRRAFRRGSHNKWRAFEEVAFVVDPYDLKVALDGSDGCENRDPNSRTEIDPAVFPLTVHLLSTIPVVLHAVGGDDGPLEIGVRLYMSSYYG	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst8g00806	1109	ProSitePatterns	Ribonuclease II family signature.	841	865	IPR022966	-
	Arst8g00806	1109	MobiDBLite	consensus disorder prediction	251	275	-	-
	Arst8g00806	1109	Coils	Coil	19	43	-	-
	Arst8g00806	1109	MobiDBLite	consensus disorder prediction	1	52	-	-
	Arst8g00806	1109	MobiDBLite	consensus disorder prediction	251	288	-	-
	Arst8g00806	1109	Pfam	Dis3-like cold-shock domain 2 (CSD2)	411	490	IPR041505	-
	Arst8g00806	1109	SUPERFAMILY	Nucleic acid-binding proteins	480	963	IPR012340	-
	Arst8g00806	1109	Gene3D	-	141	235	-	-
	Arst8g00806	1109	MobiDBLite	consensus disorder prediction	1	24	-	-
	Arst8g00806	1109	SUPERFAMILY	Nucleic acid-binding proteins	363	492	IPR012340	-
	Arst8g00806	1109	Hamap	DIS3-like exonuclease 2 [DIS3L2].	28	1084	IPR028591	GO:0000175\|GO:0034427
	Arst8g00806	1109	SUPERFAMILY	Nucleic acid-binding proteins	144	372	IPR012340	-
	Arst8g00806	1109	FunFam	DIS3-like exonuclease 2	136	238	-	-
	Arst8g00806	1109	SMART	RNB_2	520	874	IPR001900	GO:0003723\|GO:0004540
	Arst8g00806	1109	Gene3D	-	391	477	-	-
	Arst8g00806	1109	PANTHER	RIBONUCLEASE	15	1106	-	-
	Arst8g00806	1109	Pfam	RNB domain	520	873	IPR001900	GO:0003723\|GO:0004540

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst8g00806	Arst-Chr8	11142455	11148902	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst8g00806	K18758		-	gmx:100815252	1395.56

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst8g00806	8	11142455	11148902	Arst8g00806	8	11142455	11148902	ECH