Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g00229 ATGCCTTCAATCATTGTTGGAGATGATAAACCCTATTCTTTGAGCCTCAATCCCATTCTTTCTGCGTCAGGGGTGAAGGGCAAACCAGTAACTTCATTATGCCAAGAAAGTGATGGCATCCTTGGTTACATTCAATCAGTGATTCACGAGAAACCAGAAACTGAATCACCCTTTATGGTTCTTGATTTAGGGGTGGTGATGGACCTCATGGACCACTGGTCCAGAATGCTTCCAACGGTTCAACCATTCTATGCGGTGAAATGCAACCCTAACCCATCCCTGCTTGGAACACTGGCAGCACTGGGTTCCAGTTTCGACTGCGCCAGCAAAGCAGAGATCGAAGCCGTGTTGTCCCTTGGCGTCTCGTCGGATCGAATCATCTACGCTAACCCATGCAAATCAGCGTCCCACATTAGTTACGCTGCAAGCGTTGGAGTCAACATCACAACCTTTGACTCTAAAGAAGAGGTAAAAAAGATTCGAAAATGGCACCCAAACTGCCAGCTTCTCCTTCGTATAAAACCGCCACAAGACAGTGGAGCGCGAAACTCCTTGGGTTTAAAATACGGTGCACTACTGGAGGAAGTTCCAGTGCTACTCCAGGCTGCACATGATGCAGGATTAACTGTCATCGGAGTTTCCTTCCACATTGGGAGCGGAGGAGCTGACGCTAAAGCATATCACGGAGCCATTGCTGCTGCGAAGAGTGTGTTAGAAACGGCTTCAAAACTAGGCATGCCAAAGATGCACGTGCTCGATATTGGTGGCGGTTTCAGTTCTGGCACAGAGTTCGATGCGGCTGCAATTCACGTGAACGATGCTCTTGAAGCCAACTTCGGAAACGAAGAGGGCATTACGGTAATTGGCGAGCCTGGCCGTTATTTTGCTGAAACGGCTTTTACGTTGGCAACAAAAGTAATCGGGAAGCGCGTGAGAGGAGAGTTGAGAGAGTACTGGATCAACGACGGGATTTATGGATGTTTGAACTGCATAATGTTTGATTTCGCTCGCGTCACGTGCACGCCACTCAGGTGCAGCTCAAAACATGACGGAGAGAAAGAGTCCAAAACTTACTCTTCAACTGTGTTTGGACCAACATGTGATTCCTTAGATACAGTGCTAAGAGATCACCAGCTTATGGAGTTGGAATTGGAAGATTGGCTTGTTTTCCCTAAAATGGGGGCGTATACTATTTCTTCAGGTACCAACTTCAATGGGTTTAGCACATCAGCCATTCCGACATACCTTACATATTCAGCCACCTTCGTCCAAGAAAAAACTATGTTCTAA 1290 0.4713 MPSIIVGDDKPYSLSLNPILSASGVKGKPVTSLCQESDGILGYIQSVIHEKPETESPFMVLDLGVVMDLMDHWSRMLPTVQPFYAVKCNPNPSLLGTLAALGSSFDCASKAEIEAVLSLGVSSDRIIYANPCKSASHISYAASVGVNITTFDSKEEVKKIRKWHPNCQLLLRIKPPQDSGARNSLGLKYGALLEEVPVLLQAAHDAGLTVIGVSFHIGSGGADAKAYHGAIAAAKSVLETASKLGMPKMHVLDIGGGFSSGTEFDAAAIHVNDALEANFGNEEGITVIGEPGRYFAETAFTLATKVIGKRVRGELREYWINDGIYGCLNCIMFDFARVTCTPLRCSSKHDGEKESKTYSSTVFGPTCDSLDTVLRDHQLMELELEDWLVFPKMGAYTISSGTNFNGFSTSAIPTYLTYSATFVQEKTMF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g00229 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 207 220 IPR000183 GO:0003824
Arst8g00229 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 394 407 IPR000183 GO:0003824
Arst8g00229 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 104 116 IPR000183 GO:0003824
Arst8g00229 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 84 102 IPR000183 GO:0003824
Arst8g00229 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 IPR000183 GO:0003824
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 56 80 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 322 335 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 156 178 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 126 150 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 381 394 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 82 109 IPR002433 GO:0006596
Arst8g00229 429 PRINTS Ornithine decarboxylase signature 361 371 IPR002433 GO:0006596
Arst8g00229 429 FunFam Ornithine decarboxylase 66 295 - -
Arst8g00229 429 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 242 259 IPR022657 -
Arst8g00229 429 Gene3D Alanine racemase 66 295 IPR029066 -
Arst8g00229 429 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 46 416 IPR002433 GO:0006596
Arst8g00229 429 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 52 413 IPR009006 GO:0003824
Arst8g00229 429 CDD PLPDE_III_ODC 55 415 - -
Arst8g00229 429 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 84 102 IPR022653 -
Arst8g00229 429 SUPERFAMILY Alanine racemase C-terminal domain-like 280 417 IPR009006 GO:0003824
Arst8g00229 429 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 297 394 IPR022643 GO:0003824
Arst8g00229 429 SUPERFAMILY PLP-binding barrel 56 299 IPR029066 -
Arst8g00229 429 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 67 296 IPR022644 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g00229 Arst-Chr8 3158167 3159983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g00229 K01581 - gmx:548088 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g00229 8 3158167 3159983 Arst8g00229 8 3158167 3159983 ECH