Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00259 ATGGCGCAAGTGCTGTACCTGCGGTTGTGTCTCCCTGCAGAACCCCGAAAATTCTCACCTTCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAACCTTCAAAAACCACTTCATTGATTCGCTTGCTCAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTCTCAGCTGTGAGATTGATGAGGATAGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGCAAAGGTTCTGGCGAGAATGAGATGGGATATGTCCAGAGAACGCTCGGCTTTCGAACCCGGGAATTGAATCATCATGATCTTAGATTGGTTACTGACATTGTTGGCGGCACAATTCGTTGGAGAAGATATCTTGATCATCTGATCAGTTCAGTTTGTCATGATAAAGATATATCTAGTATGGAACCTCTTCTCTTACAGATTCTAAGAATAGGATTCTATGAGATTGTCAAATTAGATATGCCGCCATATGCTGTTGTAGATGAGAATGTTAGGCTTGCCAAAGTTGCGCTTAGACCTGGTGCCGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGCACTCAAGGAAGATGAGGTTCTTCCTTTGCCCAGAGTGGAGGGTGATGATCGTGCCCAAGCCCGTGCTTTAGCAACTCTATACTCACACCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAACCATTAAATTGATGAAATGGAACAACAGTGAACCTAGTTTCAGCTTAAGAGCAAACCAGGCAAGAGGTTTTTCGAGAGATGACCTTGTGATGCAGCTTAATGCATTGAAGGTCCCATACAGCGTTTCACCACATTTGGATGAATTTGTTCGCGTCAAAACCGGATTGCAGACTGTAATTCATGCCGGATTACTCAGAAAAGGCTTATGTTCAGTTCAAGATGAAAGTGCAGGTCTGGTAGTCTCTATTGTGGATCCTCAACCGGGTGAAACTGTGATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCTTATACATGGCCTCTCGTTTATGTGGCCAAGGTTTGGTATTTGCAGTTGATGTAAATCGTGGCAGATTGAGGATTCTCAAAGAGACAGCAAAGTTGCACCAAGTAGACGGCGTTGTTACCACCGTCCACGCCGATCTTCGCGTGTTAACGGATGGTGAAGCGCTAAAGAGTAACAAAGTTTTGTTGGATGCTCCATGCTCTGGGCTTGGTGTTCTTTCGAAGAGAGCAGATTTGCGATGGAACCGGAAGCTGGAAGATATGGAAGACCTGAAGAAATTACAGGACGAGCTCCTCGATGCGGCGGCCAAATTGGTAAAACCTGGTGGAGTGTTAGTTTATAGTACATGCTCCATAGATCCTGAAGAGAATGAGGAGAGGGTAGCAGCATTTCTTCAAAGACATGCGGAATTTCGCATTGATCCTGTAGACAGATTTGTTCCACCTGATTTTGTGACGGACGGTGGTTTCTATTTTTCTAACCCGGTAAAGCATTCGCTCGATGGCTCCTTTGCGGCTCGATTGGTGCGCGCTTCCTAA 1569 0.4544 MAQVLYLRLCLPAEPRKFSPSSSTSSSSSSSSSKPSKTTSLIRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSVCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNMVNGILRKLVALKEDEVLPLPRVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEETIKLMKWNNSEPSFSLRANQARGFSRDDLVMQLNALKVPYSVSPHLDEFVRVKTGLQTVIHAGLLRKGLCSVQDESAGLVVSIVDPQPGETVIDCCAAPGGKTLYMASRLCGQGLVFAVDVNRGRLRILKETAKLHQVDGVVTTVHADLRVLTDGEALKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEDLKKLQDELLDAAAKLVKPGGVLVYSTCSIDPEENEERVAAFLQRHAEFRIDPVDRFVPPDFVTDGGFYFSNPVKHSLDGSFAARLVRAS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00259 522 PRINTS RNA (C5-cytosine) methyltransferase signature 334 344 IPR023267 GO:0001510
Arst7g00259 522 PRINTS RNA (C5-cytosine) methyltransferase signature 503 520 IPR023267 GO:0001510
Arst7g00259 522 PRINTS RNA (C5-cytosine) methyltransferase signature 305 319 IPR023267 GO:0001510
Arst7g00259 522 PRINTS RNA (C5-cytosine) methyltransferase signature 402 414 IPR023267 GO:0001510
Arst7g00259 522 PRINTS RNA (C5-cytosine) methyltransferase signature 452 468 IPR023267 GO:0001510
Arst7g00259 522 Gene3D Sun protein; domain 3 212 318 - -
Arst7g00259 522 PRINTS Viridiplantae FMU-related RCMT signature 63 86 IPR023268 -
Arst7g00259 522 PRINTS Viridiplantae FMU-related RCMT signature 202 215 IPR023268 -
Arst7g00259 522 PRINTS Viridiplantae FMU-related RCMT signature 87 103 IPR023268 -
Arst7g00259 522 PRINTS Viridiplantae FMU-related RCMT signature 479 491 IPR023268 -
Arst7g00259 522 Pfam NusB family 89 195 IPR006027 GO:0003723|GO:0006355
Arst7g00259 522 MobiDBLite consensus disorder prediction 16 39 - -
Arst7g00259 522 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 245 521 IPR001678 GO:0008168
Arst7g00259 522 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 217 520 IPR029063 -
Arst7g00259 522 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 99 520 IPR004573 GO:0006364|GO:0008649
Arst7g00259 522 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 212 316 - -
Arst7g00259 522 FunFam Ribosomal RNA small subunit methyltransferase B 55 204 - -
Arst7g00259 522 Gene3D - 73 205 IPR035926 -
Arst7g00259 522 CDD AdoMet_MTases 332 458 - -
Arst7g00259 522 Gene3D Vaccinia Virus protein VP39 319 522 IPR029063 -
Arst7g00259 522 FunFam Ribosomal RNA small subunit methyltransferase B 317 521 - -
Arst7g00259 522 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 214 520 IPR023267 GO:0001510
Arst7g00259 522 SUPERFAMILY NusB-like 94 229 IPR035926 -
Arst7g00259 522 MobiDBLite consensus disorder prediction 17 39 - -
Arst7g00259 522 Pfam 16S rRNA methyltransferase RsmB/F 324 518 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00259 Arst-Chr7 1618513 1623988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00259 K03500 - gmx:100779327 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst7g00259 7 1618513 1623988 Arst7g00259 7 1618513 1623988 ECH