Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03576 ATGAGTAGACCAAATACGCGAAGCAAAAACAAGAGGCAGAGGCAAGGGGATGATGTTGATAGCACTACCGAAATATGGAGGAAAATTCACAAAACGGGTGGTATAACTGAAGAAGATATAAACCAATTGTATATGATTTGGAAGCCGGTTTGTTCAGGTTGCCGTGTCAATGCTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCTCCTCCAAATGGATCGCGGAAGTCTGGCTTGTGGATGAAGACGTCAGATTTTGTTGAAAGTCTTGGCCCCGACCCAACTAAGGATCTTCGCGCATCTGCTTCTTCACCTGCGGGTCTAACAAATCTTGGTGCAACCTGCTATGCCAACAGTATACTTCAGTGCTTGTACATGAATAAATCTTTCCGGGAAGGCATATTTTCTGTAGAACCAGAAGTTTTGCAACAGCAACCGGTGTTAAATCAGCTGGTTCGGCTTTTTGTACAGTTGCATGTTAGCAAAATGGCTTTCATAGATTCATCCCCATTCGTAANNNNNNNNNNNNNNNNNNTCCTGACATTGCTTCTTTCATTGCTGGAGCGTTGCCTGAGCCATTCCAAAATTGCAAAGGCAAGAACAATAGTTCAAGATCTTTTTCGTGGAAATGTGTCTCACGTGACAAAGTGCTCGCAATGTGGAAAAGACTCTGAAGCTTCTTCGAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTACAAAGTTTATATGAGAGCCTAGATGATTACCTTGCTATTGAAGAGCTTCATGGAGACAACCAATATTATTGCGACTCATGTAGAGCAAGAGTTGATGCAACTCGTAGCATCAAGCTCCGCTCATTGCCCGAAGTACTTAATTTTCAACTTAAACGATATGTTTTTCTTCCAAAGGATATGCGCCATAGATTGTTTGAATCATCTCCTTTTGAGTTGATATATGACTTGTCAGCTGTACTAATTCACAAGGGAAGTGCTGTTAATAGTGGTCACTACATTGCTCATATTAAGGATGAAAATACTGGGCAATGGTGGGAATTTGATGATGAAAATGTCACTAACTTAGGTCGTCATCCCTTTGGTGAAGAAGCTTCAAATTCTACTTCTAAATTAGCCAAGACTGATGTAGTTCATAGTAATTGCTCTGAAGCAAAGATAGCTGACAGTAATGGGAATGGTTTAGATGCCAAACTGTCTCACTCTTCCCATGTGGAGACATTTTCTTCTAGCGATGCATACATGTTGATGTACCATCTTAAACGTTCGAAGAATGTTGATGGAAAAGATGTTATGTTTTCTGGTACTAACCATAAAGGAGAGCGTGATGCAGTTACTGCCCAGGATGATGCTTGTCTTCCTTTCCATCTTCGTGAAGAGATTAAAAATATCAATGCCTCATATCTTGATGCTTGTGAGCAGTACAAGCAAAAGAAAGAGTTAGAATTGAGTCGTATCAATGAGCGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCCCCTGTTCAGCCACTGAAGCAACCATTTTTTTGGATTTATAGTGACTGGCTTCGCCAGTGGGCTGACAACATCATTCCAACTGCTGTTGACAACACATCTATTCAATGTTCACATGGGAAAGTCCCAGTATCAAATATTACCACAATGAAAAGATTGTCTTCTCAAGCATGGGATAAGCTACTCTCTAAGCATGGTGGGGGGCCCACACTTTCTCATGATGATTGCTGTTGGGATTGTCTGATTGAAGGAGCTCGGAATGTGGTGTCAGCTGATACCTATCGGGATCGAAGGGAATCACTGAAGCAGCTTGCACGGGATGTTCTAGATGGACATTGTGAAGATGGAAAGTACTACATTTCCAGGCCATGGTTACAGCAATGGTGGAAACGAAAAGTTCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCTATTAGCTGTCCACATGGGCAGCTTATGCCTGAACAAGCTGCTGGTGCTAAGAGAGTGCTTGTTCCTGAGGATTTTTGGCTCTTCTTATATGAAGATTCTATCTCTGTAAAACCTGATGATCCTTTGGGTTGCCCTACTTTCCCTGTTGACTCCAGAGAGTGTTCTGAATGCAGTAATGAATTATCTGAAGTGGCTTGCTTTGAGGATTCATTGAGATTAGTGAAGCAAAGACAACGTCAGAAACATGAGAAACTATTCCTGGGTAAAAGTATGCCGCTCTATCTGCATTGCAAGTATTTCTTAGTTCCATCTTTGTGGATTTCAAAATGGAGAAACTATGTTAATCCATCTGTAAAGAATTCAGATAAACCTGAAACATTAGATGGGGTAATTGATTCACTGAAGTGTGAAAAGCACTCACGACTAGTTGAGAGGCCTCCTGAATTGGTTTTCAGACGCAGTGCTATAGTTCCAAGAGAGTCTTCTGCAAGTGGTGTAACAGTTATATCTGAAAATGATTGGAAACTCTTATGTGAAGAATGGGGTGGTAATGAGGCCAAAGGAATATCTGCCAGTATTGAAAATATTGATGAGTCTGAGAATGTTTTGATTGGATCATGTGAAGAGTTGCCAGTATGTGAGGATCAGTTGGGTTCTTCAGATAAAGTGAATAATGAAACTGAGAATGGACAATTCGTGATCAAGACTTGTCCAGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGAGTTGATGCAGAAGCTAAACTATTGCAATGAGAACATAACTGTAATACTTGTCCGTGGAAAAGAGGTACCTAGATCAATATTGGAGGCTTCGAAGGGTTTTGTTGAAACAGAACGGCGGGCTTCTAAACGCACCCGTAAAACTAAAAATGGGAGTTCTATTAGTCTGAAAGTTTCTGCTTCAACATCAATGTACCAGCTTAAAATGATGATATGGGAATCCTTTGGGGTGGTCAAGGAAAATCAGTTACTACAAAAGGGCGATAAGACAATTGACATTGATGATGAATACACTACACTTGCAGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGGGATTCTGAAATCCATGAAAATCGAGATATTGCCGAGGAACTTTATGATGAGAAAATGGATACACAGCATACCGAGGAAGGGTTCCGGGGAACACTTTTGACCTCCAATGCTTCATCCCAGGCTGTTTAG 3171 0.4087 MSRPNTRSKNKRQRQGDDVDSTTEIWRKIHKTGGITEEDINQLYMIWKPVCSGCRVNAKDNPNCFCALVPPPNGSRKSGLWMKTSDFVESLGPDPTKDLRASASSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPEVLQQQPVLNQLVRLFVQLHVSKMAFIDSSPFVXXXXXXXLTLLLSLLERCLSHSKIAKARTIVQDLFRGNVSHVTKCSQCGKDSEASSKMEDFYELELNVKGLQSLYESLDDYLAIEELHGDNQYYCDSCRARVDATRSIKLRSLPEVLNFQLKRYVFLPKDMRHRLFESSPFELIYDLSAVLIHKGSAVNSGHYIAHIKDENTGQWWEFDDENVTNLGRHPFGEEASNSTSKLAKTDVVHSNCSEAKIADSNGNGLDAKLSHSSHVETFSSSDAYMLMYHLKRSKNVDGKDVMFSGTNHKGERDAVTAQDDACLPFHLREEIKNINASYLDACEQYKQKKELELSRINERRQEVRSVLAEAPVQPLKQPFFWIYSDWLRQWADNIIPTAVDNTSIQCSHGKVPVSNITTMKRLSSQAWDKLLSKHGGGPTLSHDDCCWDCLIEGARNVVSADTYRDRRESLKQLARDVLDGHCEDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAAGAKRVLVPEDFWLFLYEDSISVKPDDPLGCPTFPVDSRECSECSNELSEVACFEDSLRLVKQRQRQKHEKLFLGKSMPLYLHCKYFLVPSLWISKWRNYVNPSVKNSDKPETLDGVIDSLKCEKHSRLVERPPELVFRRSAIVPRESSASGVTVISENDWKLLCEEWGGNEAKGISASIENIDESENVLIGSCEELPVCEDQLGSSDKVNNETENGQFVIKTCPEVCESCIGEKESCELMQKLNYCNENITVILVRGKEVPRSILEASKGFVETERRASKRTRKTKNGSSISLKVSASTSMYQLKMMIWESFGVVKENQLLQKGDKTIDIDDEYTTLADVNIFAGDQIIVRDSEIHENRDIAEELYDEKMDTQHTEEGFRGTLLTSNASSQAV 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03576 1056 SUPERFAMILY Ubiquitin-like 948 1015 IPR029071 -
Arst6g03576 1056 Coils Coil 1049 1056 - -
Arst6g03576 1056 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 74 422 - -
Arst6g03576 1056 SUPERFAMILY Cysteine proteinases 106 425 IPR038765 -
Arst6g03576 1056 CDD Ubl_USP48 946 1049 IPR044743 GO:0004197|GO:0004843|GO:0016579
Arst6g03576 1056 Gene3D - 719 838 IPR035927 -
Arst6g03576 1056 ProSiteProfiles DUSP domain profile. 594 696 IPR006615 GO:0004843
Arst6g03576 1056 Gene3D - 945 1016 - -
Arst6g03576 1056 SUPERFAMILY DUSP-like 490 578 IPR035927 -
Arst6g03576 1056 ProSiteProfiles DUSP domain profile. 722 842 IPR006615 GO:0004843
Arst6g03576 1056 Gene3D Cysteine proteinases 93 424 - -
Arst6g03576 1056 MobiDBLite consensus disorder prediction 1 21 - -
Arst6g03576 1056 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Arst6g03576 1056 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 318 336 IPR018200 GO:0004843|GO:0006511
Arst6g03576 1056 Coils Coil 472 499 - -
Arst6g03576 1056 ProSiteProfiles DUSP domain profile. 487 579 IPR006615 GO:0004843
Arst6g03576 1056 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 424 IPR028889 -
Arst6g03576 1056 Pfam Ubiquitin carboxyl-terminal hydrolase 108 142 IPR001394 GO:0004843|GO:0016579
Arst6g03576 1056 Pfam Ubiquitin carboxyl-terminal hydrolase 194 421 IPR001394 GO:0004843|GO:0016579
Arst6g03576 1056 FunFam Ubiquitin carboxyl-terminal hydrolase 26 478 576 - -
Arst6g03576 1056 SMART dusp 505 576 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03576 Arst-Chr6 103680346 103688002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03576 105 359 Miscellaneous Gene Families AT4G31670 26.910 1.09e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03576 - - gmx:100795556 1744.94