Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02833 ATGGGTTCAAGGCGTGTAGGTGTATTGACCCTAAGTCTTGTTATTGTAGCGTCACTGGTGTCCGCTGCAATGTGCGGCGTTCCCAGAAGACCCGTTGATGTTCAATTTGGCCGTAACTATGTTCCCACTTGGGCCTTTGACCACATCAAATACTTCAATGGCGGTTCTGAGATTCAGCTTCATCTTGATAAATATACTGGCACTGGATTCCAGTCCAAAGGTTCATACTTGTTTGGTCACTTCAGCATGTACATCAAGATGGTTCCTGGTGATTCCGCTGGCACTGTAACCGCTTTCTATTTGTCTTCACAAACTGCGGAGCATGATGAAATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATATTGCAAACCAATGTGTTCACCGGAGGTAAAGGTGATAGAGAACAGAGAATCTATCTCTGGTTTGATCCCACCAAAGAATACCACAGATATTCAGTTCTATGGAACTTGTATCAAGTTGTGTTCTTTGTGGATGATGTACCAATTAGGGTGTTCAAGAACTGCAAGGACTTGGGTGTGAAATTCCCATTTGACCAACCAATGAAAATCTACAACAGCTTATGGAACGCAGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCGAAAGCACCATTCATAGCTTCCTACAAAGGCTTCCACATTGATGGTTGTGAAGCCTCCGTTGAAGCCAAGTTCTGTTCCACTCAAGGTAAGAGATGGTGGGACCAACAAGAATTCAGAGACCTTGATGCTCTTCAATGGAGGAGGCTTAGATGGGTTCGCCAGAAGTTCACTATTTACAACTATTGCAATGATCGAAAGCGTTACCCTACTCTTCCTCCTGAATGCTTTAGAGACCGTGACATTTAA 894 0.4407 MGSRRVGVLTLSLVIVASLVSAAMCGVPRRPVDVQFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQTAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSVLWNLYQVVFFVDDVPIRVFKNCKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVEAKFCSTQGKRWWDQQEFRDLDALQWRRLRWVRQKFTIYNYCNDRKRYPTLPPECFRDRDI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02833 297 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 224 IPR000757 GO:0004553|GO:0005975
Arst6g02833 297 Pfam Glycosyl hydrolases family 16 37 217 IPR000757 GO:0004553|GO:0005975
Arst6g02833 297 Gene3D - 21 297 - -
Arst6g02833 297 FunFam Xyloglucan endotransglucosylase/hydrolase 23 293 - -
Arst6g02833 297 PIRSF EndGlu_transf 1 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Arst6g02833 297 CDD GH16_XET 31 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Arst6g02833 297 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 244 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Arst6g02833 297 ProSitePatterns Glycosyl hydrolases family 16 active sites. 110 120 IPR008263 GO:0004553|GO:0005975
Arst6g02833 297 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 295 IPR013320 -
Arst6g02833 297 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 291 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02833 Arst-Chr6 90912117 90915393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02833 6 297 Glycoside Hydrolase AT5G13870 77.133 2.84e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02833 K08235 - gmx:547775 567.77