Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01880 ATGATGAGGGATTTCGTCATCCTTGGTTCATCCATTGTCACTCCTCCTCCGAATCCCCCATCTTCTTCTTCATCTTCAACGCCATCAACCACTCCTTCTCGCTCCCACCGCCACCGCCACCACCACCACAAGCCGAAGCTCACTCCTTCGCATTCGCATTCTTCCTCTATCTCCTGCACTCTCCAAGCCCCCCTCAACCACTATATCCATGTCCACGAGAATGCTTCCGAATTTGTTCATTCTCTGAACGTTAAGCTCCTCGCGAAGGAGGTTCTGGCGGGTATTCGAGGTAGGAAGGTTCGGGCTGTGATTGATTCTCTCAAGAGAGTTCAGGAGCTTGGTGGCGTCTCCTCCTTATCCTCCCATTTTGATGGACATGCCATGGATCTCTTCTCTAAGGAGTGTCGCCGCTTGGTCAAATCCGGTCAACTTGAGGAAGCTGTTCAATTCATGGAGGTTCTCGCACATTTCCAGTTGTCAGTCAGAGAACTTGTTCAGCCGTTGGACATAATAAAACAGTGTGTTTGTAATCAAGATCCAGATTTAGCTGTGAGGTATGCATGTCTTCTTCCACATGCACATATACTATTCTGCAACATTATAAGTGAATTTGGAAAAAGAAGGGATTTAGTTTCTGCTTTGAAAGCATACGAAGCAGTGAAGAAAAACTTGGATAACCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGCCTTTGTGGTGATTTCATGAAATCTAGGTACATATATGAGGACTTACTCAATCAGAAGATTACTCCAAATATATACGTGTTCAACAGTCTCATGAATGTGAATACCCATGATCTTAGCTACACCTTAAATCTGTATCAGAATATGCAGAATCTTGGTCTGAAGCCAGACATGACATCTTATAATATCCTACTCAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCCCAAGACATTTACAGGGAACTTAAGCAATTGGAATCAGCAGGATGGCTGAAATTAGATGTTTTCACCTACAGCACGATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTCTAAAAATCAAGCAGGATATGCTCTCCGCCGGTGTTTCTCTTAATACTGTTGCGTGGTCGTCATTAATCAATGCCTGCGCACATGCAGGGCTTGTAGAGCAGGCAATTCAATTGTTCGAAGAAATGCTTTTGGCCGACTGCGAGCCTAATACGCAATGCTTTAACATCATTTTACATGCATGTGTTGAAGCATGTCAGTATGACCGAGCTTTTCGCTTGTTCTATTCTTGGAAGGGAAATAAGATGTTGGGGTCCTTTGGTGAAGGGAACAATAGCAAGTTAGAGCATGGGGACACGCAGACTGCTATTACCGCGCCAAACAGCATTTCTAGGCCGCATATCTTGAGTTTTGCTGAGAGATTCCCTTTCACACCAACTATAGCAACATATAATATTTTGCTGAAGGCTTGTGGTACTGATTACTACCATGCTAAAGCATTAATCACTGAGATGAAAAAAGTAGGTCTTTCCCCAAATTATATAAGCTGGTCCATTTTGATAGATATATGTGGCGGATCAGATAACGTGGGAGGTGCCATCGAGATTCTGAAGATCATGTTTGATGCTGGAATTAAACCTGATGTTGTTGCATATACTACAGCCATAAAGGTCTGTGTAGAAAGTAAGAATTTTAAGCAAGGATTGATGCTATATGAAGAAATGAAAACATATGAGATACATCCAAATTGGGTGACATATAACACACTACTAAGGGCACGCAACAGATACGGATCCGTACTTGAGGTGCAACAATGCTTGACCATATACCAGGATATGCGAAAAGCAGGGTACAAACCCAATGATTACTATCTGGAAGAACTTATTGAGGAGTGGTGTGAAGGAGTGATACAAGATAACAGCAAGATCCAAAGAGAATTTTCTTCCAGCAATTTCTCTGAATTAGAGAGACCCCCGAGTTTACTTCTTGAAAAGATTGCGGCACACCTGTTAAAGAGGGTAGCTGACATCCTAGCTATTGATGTTCAAGGACTCACAAAGGTTGAAGCTCGCTTGGTTATTCTTGCAGTTCTTAGAATGATCAAAGAAAACTATAGTTCAGGACATTCTGTGAATGATGACATTTTGATCATCATAGGAGCTACAAAGGCAGATGAAACTCCATCCCAGCACATATTAGAAGTGCAAGAGGCAATCATAAAACTTCTTCAGAATGAATTGGGCCTTGAAATTTTTCCAGCTAAAACCAGGTTTGCACTAAGTGACACATCAAAGTTAGAAATCCCTAACCTTACAAATCTCAGCATAGAAGCACTACCAGGAGAGAAGGCATTAACCACAACAAGAAGGCCTGCAGTTCTACATAGGTTGAAGGTCACCAAGAAATCTTTGTATGGTTGGTTGCATAGGAAACTAAGCATTAAATAG 2451 0.4206 MMRDFVILGSSIVTPPPNPPSSSSSSTPSTTPSRSHRHRHHHHKPKLTPSHSHSSSISCTLQAPLNHYIHVHENASEFVHSLNVKLLAKEVLAGIRGRKVRAVIDSLKRVQELGGVSSLSSHFDGHAMDLFSKECRRLVKSGQLEEAVQFMEVLAHFQLSVRELVQPLDIIKQCVCNQDPDLAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEAVKKNLDNPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNTHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKQLESAGWLKLDVFTYSTIIKVFADAKLWQMALKIKQDMLSAGVSLNTVAWSSLINACAHAGLVEQAIQLFEEMLLADCEPNTQCFNIILHACVEACQYDRAFRLFYSWKGNKMLGSFGEGNNSKLEHGDTQTAITAPNSISRPHILSFAERFPFTPTIATYNILLKACGTDYYHAKALITEMKKVGLSPNYISWSILIDICGGSDNVGGAIEILKIMFDAGIKPDVVAYTTAIKVCVESKNFKQGLMLYEEMKTYEIHPNWVTYNTLLRARNRYGSVLEVQQCLTIYQDMRKAGYKPNDYYLEELIEEWCEGVIQDNSKIQREFSSSNFSELERPPSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVILAVLRMIKENYSSGHSVNDDILIIIGATKADETPSQHILEVQEAIIKLLQNELGLEIFPAKTRFALSDTSKLEIPNLTNLSIEALPGEKALTTTRRPAVLHRLKVTKKSLYGWLHRKLSIK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01880 816 Gene3D Tetratricopeptide repeat domain 327 459 IPR011990 GO:0005515
Arst6g01880 816 Gene3D Tetratricopeptide repeat domain 195 326 IPR011990 GO:0005515
Arst6g01880 816 Gene3D Tetratricopeptide repeat domain 468 657 IPR011990 GO:0005515
Arst6g01880 816 MobiDBLite consensus disorder prediction 33 49 - -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 326 IPR002885 -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Arst6g01880 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 367 634 - -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 372 406 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 551 585 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 516 550 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 299 324 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 337 370 IPR002885 -
Arst6g01880 816 NCBIfam pentatricopeptide repeat 230 264 IPR002885 -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Arst6g01880 816 Pfam Pentacotripeptide-repeat region of PRORP 204 324 IPR033443 -
Arst6g01880 816 MobiDBLite consensus disorder prediction 9 56 - -
Arst6g01880 816 Pfam PPR repeat 337 367 IPR002885 -
Arst6g01880 816 Pfam PPR repeat family 370 416 IPR002885 -
Arst6g01880 816 Pfam PPR repeat family 548 594 IPR002885 -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 621 IPR002885 -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Arst6g01880 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Arst6g01880 816 Pfam Pentatricopeptide repeat domain 498 527 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01880 Arst-Chr6 23174142 23179543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01880 191 643 Glycosyltransferase AT1G05670 21.720 1.15e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01880 - - gmx:100794606 1164.06