Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01816 ATGCCTCGCTATGAAGATAAATACGGCAACACACGCCTCTATGTTGGTCGATTGGCTTCAAGGACGCGTTCCCGTGATCTGGAGCGAGTTTTCAGCCGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTCAGCGATCCTAGAGATGCTGATGATGCAAGATACAACTTGGATGGCCGTGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCGAAAGGGGTTCCTCGTGGTTCCCGTGAATATTTGGGTCGTGGTCCTCCTCCTGGAACTGGGCGTTGCTTTAACTGTGGTATTGATGGCCATTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTATCGTTGTGGTGAGAGGGGTCATATAGAAAAAAACTGCAAGAACAGTCCCAAAAAGCTGAGACGTGGGCGTAGTTATTCCCGCTCTCCGGTCAGGTCACGTTCCCCAGTCAGGTCACGCTCTCCTCGTCGTGGCAGAAGCAGGGACAGGAGTTACACCCCAGAACGCAGTTACAGTCGATCAAGATCCCCAGTTAGGGGGGATCGAAGCCCAGTTCGTGATAGATCAGAGAGCCCACGCTCTAGAAGCCCTGAACCCAAAGGTAGCCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGATGAAGGGAGTCCACAGAAGAGAGGTGATGCATCTCCTGGCAATGAGAGGATGGTTACACAGCAAGATGGATCTGATTACAGTGATGGCCCCAGAGGAAAGAGCAGAAGCCCCGCTAGTCCAGCAGGGGATGACAGCCCAAAGGCTAATGGTCGCAGCCGCAGTCCTAGTCCCAGAGATGATGACAGAAGCCCCATTGATGACGAAGAAGACAACCAGCGTAATCTACCAAGAGGCAGTGAGTCCCCTTAA 927 0.5146 MPRYEDKYGNTRLYVGRLASRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLRRGRSYSRSPVRSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRGDRSPVRDRSESPRSRSPEPKGSPQPSKARKHSPSPDEGSPQKRGDASPGNERMVTQQDGSDYSDGPRGKSRSPASPAGDDSPKANGRSRSPSPRDDDRSPIDDEEDNQRNLPRGSESP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01816 308 MobiDBLite consensus disorder prediction 134 308 - -
Arst6g01816 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Arst6g01816 308 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Arst6g01816 308 MobiDBLite consensus disorder prediction 279 301 - -
Arst6g01816 308 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Arst6g01816 308 MobiDBLite consensus disorder prediction 169 205 - -
Arst6g01816 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Arst6g01816 308 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Arst6g01816 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 203 - -
Arst6g01816 308 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Arst6g01816 308 SMART rrm1_1 12 77 IPR000504 GO:0003723
Arst6g01816 308 Gene3D - 3 89 IPR012677 -
Arst6g01816 308 Gene3D - 120 153 - -
Arst6g01816 308 Gene3D - 91 119 - -
Arst6g01816 308 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01816 Arst-Chr6 20733414 20736808 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01816 K12896 - gmx:100813237 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01816 6 20733414 20736808 Arst6g01816 6 20733414 20736808 ECH