Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g01572 | ATGTCTGGGGAAGAATTTGATGGGCATGATGATATGGGAGGGTATGTGCCTGAGGACCCTGGTTTTCAACAAGATCATTCTGTTGATCTTGATGAGGGGAATGTGTTTGATAGCTCTGGTTTTCCTCAGCTGCATCAACTTGATGAACACCATGATCCAGGAAATTTTGCTGAGGATGCCAATCCTCCTGTGAATGATTTTGCTGGCTATGATGTTGGAGATTTTCCGGAAGACCCCAGTTCTCCACAAGAGGAGCATGTCATTGAAGAAAATCATGATGTAGGAGATGTAACTGAGAATTTTGGTTCTGTGCCACAAGAAGGGCATGAGAATGATTCCCAAGGACATGAAATTAAGAAGTGGCCTGGGTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTCCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGGAAGGGTGAGTTTATTAAGAAAATCACAGAAGAAACTAAGGCGCGAATCAAAATTCTTGATGGTCCTCCTGGAACCATGGAAAGAGCTGTAATGGTATCGGCAAAAGAAGAGCCAGATTGGACCATACCACCTGCAGTTGAGGGTTTGTTAAGGGTTCATAAACAAGTCATCAATCTTGACCATGACTCGGCAGACACATCAGGTGCTGGGCCCTCAATTATCACTAGGCTTCTAGTTGCAGATACTCAAGCAGGAAGTCTGATTGGGAAGCAGGGTTCCACCATAAAATCCATTCAAGATGGCTCTGGTTGCATTATACGTGTTCTTGGATCAGAAAACCTACCTGTGTTTGCTTTGAGAGACGATAGTGTTGTTGAAGTACAAGGTGAACCTGCTGGAGTTCATAAGGCAGTTGAACTTATTGCAGTTCATTTGCGTAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTATTTGAAACAAAGATGCAAATGCCAGATGTTCGAGTCAACCACAATGCACCCCCACGCCAACCTTGGGTTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGTGGTGGTGGGCCTGCTTTTGCACCACCTAGTCAGCAATATATGCCACCATCACATCCCTATGATAATTATTACCCAACAGCCGACATGCCTCCTATGGACAAACAATTCCATCAGGCTCCACTATCTGCTTATGGCAGGGATCCTTCCGCTGGAATTCATCCACCAAGTGCACAACCACAACAGTCTGCTGCAACTAAGGTTACACAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATTGGAGCATCAGGTGCAAATATCAGTTACATTCGTCGTGCTAGTGGAGCAAGTGTTACGGTTCAGGAGACAAGGGGAGTGCCAGGGGAGATGACTGTTGAAATAAGTGGGACTACATCAGAGATACAGGCAGCCCAACAGCTGGTTCAGAACTTTGTCGCTGAAGCTGCAAGTGCTGCCCAGGATCAAGTGGCGGGAGCAATTAGCCAAGGTTACAGTTCCTATCCAACTAATGCTCCAGCATATGCTTCTCCGCCCTCTAGCACTGCTGGCCATGTGCCTTCTTCCGAGTATGGCCCCATGTATGGTACCAATTATGGTTATTAA | 1575 | 0.4654 | MSGEEFDGHDDMGGYVPEDPGFQQDHSVDLDEGNVFDSSGFPQLHQLDEHHDPGNFAEDANPPVNDFAGYDVGDFPEDPSSPQEEHVIEENHDVGDVTENFGSVPQEGHENDSQGHEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTMERAVMVSAKEEPDWTIPPAVEGLLRVHKQVINLDHDSADTSGAGPSIITRLLVADTQAGSLIGKQGSTIKSIQDGSGCIIRVLGSENLPVFALRDDSVVEVQGEPAGVHKAVELIAVHLRKFLVDRSIVGVFETKMQMPDVRVNHNAPPRQPWVPPPQGFPAPGGGGPAFAPPSQQYMPPSHPYDNYYPTADMPPMDKQFHQAPLSAYGRDPSAGIHPPSAQPQQSAATKVTQHMQIPLSYADAVIGASGANISYIRRASGASVTVQETRGVPGEMTVEISGTTSEIQAAQQLVQNFVAEAASAAQDQVAGAISQGYSSYPTNAPAYASPPSSTAGHVPSSEYGPMYGTNYGY | 524 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g01572 | 524 | ProSiteProfiles | Type-1 KH domain profile. | 401 | 465 | - | - | |
| Arst6g01572 | 524 | CDD | KH-I_PEPPER_like_rpt3 | 401 | 469 | - | - | |
| Arst6g01572 | 524 | MobiDBLite | consensus disorder prediction | 379 | 400 | - | - | |
| Arst6g01572 | 524 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 213 | 300 | IPR036612 | GO:0003723 | |
| Arst6g01572 | 524 | MobiDBLite | consensus disorder prediction | 79 | 96 | - | - | |
| Arst6g01572 | 524 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
| Arst6g01572 | 524 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 392 | 472 | IPR036612 | GO:0003723 | |
| Arst6g01572 | 524 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 117 | 487 | - | - | |
| Arst6g01572 | 524 | CDD | KH-I_PEPPER_rpt1_like | 127 | 195 | - | - | |
| Arst6g01572 | 524 | CDD | KH-I_PEPPER_rpt2_like | 219 | 291 | - | - | |
| Arst6g01572 | 524 | Gene3D | K Homology domain, type 1 | 390 | 477 | IPR036612 | GO:0003723 | |
| Arst6g01572 | 524 | Gene3D | - | 127 | 295 | - | - | |
| Arst6g01572 | 524 | MobiDBLite | consensus disorder prediction | 318 | 352 | - | - | |
| Arst6g01572 | 524 | Pfam | KH domain | 403 | 466 | IPR004088 | GO:0003723 | |
| Arst6g01572 | 524 | Pfam | KH domain | 130 | 182 | IPR004088 | GO:0003723 | |
| Arst6g01572 | 524 | Pfam | KH domain | 220 | 286 | IPR004088 | GO:0003723 | |
| Arst6g01572 | 524 | MobiDBLite | consensus disorder prediction | 320 | 350 | - | - | |
| Arst6g01572 | 524 | SMART | kh_6 | 400 | 470 | IPR004087 | GO:0003676 | |
| Arst6g01572 | 524 | SMART | kh_6 | 216 | 291 | IPR004087 | GO:0003676 | |
| Arst6g01572 | 524 | SMART | kh_6 | 126 | 199 | IPR004087 | GO:0003676 | |
| Arst6g01572 | 524 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 122 | 181 | IPR036612 | GO:0003723 | |
| Arst6g01572 | 524 | ProSiteProfiles | Type-1 KH domain profile. | 127 | 194 | - | - | |
| Arst6g01572 | 524 | ProSiteProfiles | Type-1 KH domain profile. | 217 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g01572 | Arst-Chr6 | 15790867 | 15795372 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst6g01572 | K21444 | - | gmx:100799901 | 717.998 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Arst6g01572 | 6 | 15790867 | 15795372 | Arst6g01572 | 6 | 15790867 | 15795372 | PCT |