Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01353 ATGAAAAAACGTCTCCTTCTATACTCATTAAGCTCAACCCTTAAACCCAAATACAAAGCGTTCTATTTCTATATCTCGTCCGTATCACTTTTGAGTGAACAATCAAAATGGAACCCGTCAACCAACGTTGTCATTACGAACCCAACCCTGGTGGCCATGGAGTCTTGCTCCAGCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGACCCGCACGGGCCTCATGGACCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACTCCGGAGACGTTCGTTATGCCCACGCTGTCTTCGACCGTATTGAACAACCCAACACGTTCATGTGGAACACCATGATCAGGGGCTACAGCAGGGCCAATGTTCCTGCTATGGCGTTTTCCTTCTTTCTCCGAATGCTTCGCCAACTCTCCGAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAGGCGTGCGAGCAGTTCTCGGGTTCTGTTGAGGGGGAATCGGTGCACTGTTTGATTCGGAAGACGGGCTTTGATTCTGAGTTGCTAGTGCGAAATGGGTTGGTTCACTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTACTTGGACCACAATGATTGATGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTGCGGTGCTCTCGGCGTGTTCCCAGAATGGTGATATTGTCATGGGAAGGAGTATCCATGAAGACATAGCAAGGAAGAATGTAAGGTATACTTTGAGTTTAAACAATGCATTATTGGACATGTATGTGAAATGCGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGCAGACTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCGCATAAAAACGTGGTCTCATGGAATGCAATGATTGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAGTTGTTTTGGGAAATGATCGCAGCAGGTATGGTTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCGTTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGGTAAAGGCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGAAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGCAATGTCGAGCTTGCTAAATTGTCGGCTGGTAACCTTATGAAGTTGAATCCAGAAGACAGTGGAACATATGTTCTGCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATAGAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGACCTATAAAGTACTGGATCTAATATATTTGTTGTCAAAATTGGAAGACTATGACTCTGAGTTATTTATTATAGGCTTCAATGGCTAA 2019 0.4468 MKKRLLLYSLSSTLKPKYKAFYFYISSVSLLSEQSKWNPSTNVVITNPTLVAMESCSSMRQLRQIQARMTRTGLMDHTFPASRALAFCALSDSGDVRYAHAVFDRIEQPNTFMWNTMIRGYSRANVPAMAFSFFLRMLRQLSEMDCRTFVFSLKACEQFSGSVEGESVHCLIRKTGFDSELLVRNGLVHFYAERSWLKSARQVFDESSERDVVTWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLIAVLSACSQNGDIVMGRSIHEDIARKNVRYTLSLNNALLDMYVKCGSLMAARELFDKMQTKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFWEMIAAGMVPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIVVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGVKAKREHYSCMIDLLGRTGLLEEAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMKLNPEDSGTYVLLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIEGEFKEFLVADESNTQSEETYKVLDLIYLLSKLEDYDSELFIIGFNG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01353 672 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 319 659 IPR046960 GO:0003723|GO:0009451
Arst6g01353 672 Pfam E motif 562 624 IPR046848 -
Arst6g01353 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Arst6g01353 672 Pfam PPR repeat 112 139 IPR002885 -
Arst6g01353 672 Pfam PPR repeat 286 312 IPR002885 -
Arst6g01353 672 Pfam PPR repeat 314 338 IPR002885 -
Arst6g01353 672 Pfam PPR repeat 519 544 IPR002885 -
Arst6g01353 672 Pfam PPR repeat 419 443 IPR002885 -
Arst6g01353 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Arst6g01353 672 Gene3D Tetratricopeptide repeat domain 158 273 IPR011990 GO:0005515
Arst6g01353 672 Gene3D Tetratricopeptide repeat domain 26 157 IPR011990 GO:0005515
Arst6g01353 672 Gene3D Tetratricopeptide repeat domain 419 649 IPR011990 GO:0005515
Arst6g01353 672 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 418 647 - -
Arst6g01353 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Arst6g01353 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 342 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 314 338 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 345 379 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 213 247 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 447 480 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 286 313 IPR002885 -
Arst6g01353 672 NCBIfam pentatricopeptide repeat 113 139 IPR002885 -
Arst6g01353 672 Pfam PPR repeat family 342 389 IPR002885 -
Arst6g01353 672 Pfam PPR repeat family 210 257 IPR002885 -
Arst6g01353 672 Pfam PPR repeat family 446 492 IPR002885 -
Arst6g01353 672 FunFam Pentatricopeptide repeat-containing protein At3g28660 43 164 - -
Arst6g01353 672 FunFam Pentatricopeptide repeat-containing protein At2g36730 165 263 - -
Arst6g01353 672 SUPERFAMILY TPR-like 182 337 IPR011990 GO:0005515
Arst6g01353 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Arst6g01353 672 FunFam Pentatricopeptide repeat-containing protein chloroplastic 268 414 - -
Arst6g01353 672 Gene3D Tetratricopeptide repeat domain 341 405 IPR011990 GO:0005515
Arst6g01353 672 Gene3D Tetratricopeptide repeat domain 274 340 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01353 Arst-Chr6 12778031 12780109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01353 99 650 Glycoside Hydrolase AT3G49170 32.916 3.50e-94 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01353 - - ccaj:109796361 988.793