Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01173 ATGACAGACAATGGAGTTGGGCCTGATCTTGTTACACACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACTACCCTTAACATTATTATCCATTGTCTTGTGAAGCTTCAACAGTATGACAAAGCCATCGATATTTTCAATTCCATGAGGAAAAATAAGTCAGATTGTAGTCCTGATGTTGTAACTTTTACCAGCATCATACACTTGTATTCTACATGTGGGCAAGTTGAAAATTGCGTGGCTGCATTTAATATGATGCTTGCAGAAGGGCTGAAACCCAACACAATCTCATATAATTCACTAATTGGTGCATATGCTGCTTGCGGGATGGACAAGGAGGCACTTATGGTTTTCAATGAGATCAAACAAAATGGTTTCCGGCCAGATATTGTGTCCTATACATCTTTGCTTAATGCTTATGGAAGATCACAAAAGCCTCAAAAAGCAAGAGAAATATTTGCAATGATAAAGAAAAACAGATTGAAGCCTAACATTGTTACTTACAATGCACTAATTGATGCCTATGGATCTAATGGTTTGTTGGCGGAGGCAATTGAAATATTGCGTGAGATGGAACAAGATGGAATTTATCCAAATGTTGTCTCAATATGCACTCTCTTGGCTGCCTGTGGGCGGTGCAGTCAGAAGGTGAAGATTGATACAATCCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAATACAGTTGCCTATAATTCAGCTATAGGAGCCTATATGAATGTGGGGAAATATGACAAAGCTGTAGGCTTGTATAAATCTATGAGGAAGAAAAATATAAAACCTGATTCTGTTACTTGCACTGTGTTGATAAGTGGTTGTTGTAATATGTCAAAATATAGTGAAGCCCTAGTTTTCATGGAAGAAATGATGCATCTTAGACTTCCTTTGACCAAAGAGGTCTACTCTTCTGCCATATGTGCTTACAGCAAACTGGGACAAGTCATAGAAGCAGAATCCACATTTAACTTGATGAAATCATCTGGTTGCTATCCTGATGTAGTGGCATATACTGCAATGCTTGATGCATACAATGCAGGAGAGAATCGGGAAAAAGCATATGCACTCTTTGAAGAAATGGAAGTGAATGGCATCAAGCTAGATACGATTGCATGTGCTGCCCTGATGAGGGCCTTTAATAAAGGTGGTCAACCAGGAAGGGTCCTCAGTCTTGCAGAAAGTATGAGAGAAAAAGATATTCCTTTCAGTGATACCATTTATTTTGAAATGGTATCTGCCTGTAGCTCATTGCATGATTGGAGGACAGCGGTTGATATCATGAAGTACATAGAGCCCTCACTTCCTGTAATTTCGTCTGGATGCTTGAACCTTTTCCTCAAATTTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTACAAGATGTTGGCATCGGGTGCTGATATTAACCTCAACACTTATTCTGTTATATTGAAAACCCTCTTATCCTCTGGAAACTGGAGGAAATATTTAGAGGTACTACAATGGATGGAGGATTCAGGAATTCAACCATCAAACGAAATGTACCATGATATATCCTCCTATTCACAAAGATGTGTTGGGGCTGAGAATGCTGCAGTGGTAAAAGAAAGACTTGAATCCGTGAAGGGAAAATCCAGGGAACGATTTTCTCCAAGCCAATCACGTGAGTCCACTGCACTCAGCTCACCCTTGTTTTCGAATTAG 1779 0.3918 MTDNGVGPDLVTHNIVLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIIIHCLVKLQQYDKAIDIFNSMRKNKSDCSPDVVTFTSIIHLYSTCGQVENCVAAFNMMLAEGLKPNTISYNSLIGAYAACGMDKEALMVFNEIKQNGFRPDIVSYTSLLNAYGRSQKPQKAREIFAMIKKNRLKPNIVTYNALIDAYGSNGLLAEAIEILREMEQDGIYPNVVSICTLLAACGRCSQKVKIDTILSAAEMRGIKLNTVAYNSAIGAYMNVGKYDKAVGLYKSMRKKNIKPDSVTCTVLISGCCNMSKYSEALVFMEEMMHLRLPLTKEVYSSAICAYSKLGQVIEAESTFNLMKSSGCYPDVVAYTAMLDAYNAGENREKAYALFEEMEVNGIKLDTIACAALMRAFNKGGQPGRVLSLAESMREKDIPFSDTIYFEMVSACSSLHDWRTAVDIMKYIEPSLPVISSGCLNLFLKFLGKSGKIETMLKLFYKMLASGADINLNTYSVILKTLLSSGNWRKYLEVLQWMEDSGIQPSNEMYHDISSYSQRCVGAENAAVVKERLESVKGKSRERFSPSQSRESTALSSPLFSN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Arst6g01173 592 Gene3D Tetratricopeptide repeat domain 408 585 IPR011990 GO:0005515
Arst6g01173 592 Pfam Pentatricopeptide repeat domain 139 200 IPR002885 -
Arst6g01173 592 Pfam Pentatricopeptide repeat domain 204 233 IPR002885 -
Arst6g01173 592 Pfam Pentatricopeptide repeat domain 1 56 IPR002885 -
Arst6g01173 592 Pfam Pentatricopeptide repeat domain 489 537 IPR002885 -
Arst6g01173 592 Pfam Pentatricopeptide repeat domain 384 428 IPR002885 -
Arst6g01173 592 Gene3D Tetratricopeptide repeat domain 322 391 IPR011990 GO:0005515
Arst6g01173 592 Gene3D Tetratricopeptide repeat domain 216 321 IPR011990 GO:0005515
Arst6g01173 592 Gene3D Tetratricopeptide repeat domain 144 215 IPR011990 GO:0005515
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Arst6g01173 592 MobiDBLite consensus disorder prediction 577 592 - -
Arst6g01173 592 Gene3D Tetratricopeptide repeat domain 1 143 IPR011990 GO:0005515
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Arst6g01173 592 FunFam Predicted protein 149 264 - -
Arst6g01173 592 FunFam Pentatricopeptide repeat-containing protein At2g41720 409 588 - -
Arst6g01173 592 FunFam Pentatricopeptide repeat-containing protein At2g41720 3 73 - -
Arst6g01173 592 Pfam PPR repeat family 329 372 IPR002885 -
Arst6g01173 592 Pfam PPR repeat family 256 304 IPR002885 -
Arst6g01173 592 Pfam PPR repeat family 80 128 IPR002885 -
Arst6g01173 592 SUPERFAMILY TPR-like 54 351 IPR011990 GO:0005515
Arst6g01173 592 NCBIfam pentatricopeptide repeat 83 117 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 153 187 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 47 81 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 118 152 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 363 397 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 293 321 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 11 45 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 188 222 IPR002885 -
Arst6g01173 592 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Arst6g01173 592 MobiDBLite consensus disorder prediction 566 592 - -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Arst6g01173 592 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 360 541 - -
Arst6g01173 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01173 Arst-Chr6 10846156 10850346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01173 30 543 Glycosyltransferase AT1G05670 23.269 6.36e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01173 - - adu:107492625 1173.3