Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01057 ATGAATCAATTGGCGGATTTCGGACGCATATTCCAAATGTTTGATCATGATGACGACGGGAAGATCTCAAAGGAGGAGCTTTTAGAGTCCGTAACAAAACTAGGGTTAGGCGTCATGAAGCATGATTTGATTCAAATGATCGCGAGACTCGACGCGAATGGCGACGGATACGTAGACTTTGACGAGTTTGAGAGGTTGTACAAGAATGTAATGGGCGACGACGACGTCTGCGGCGGCGGCGGCGACGAGGAAGAGGACATGAAGGAGGCTTTCCAATTGTTCGATCAAAATGGCGACGGGTTTGTAAGTGGTGAGGAATTGAGTTCGGTTTTGTGTTCATTGGGATTAAGGCAAGGAAAGAAGACCTTAGAGGATTGCAAGAACATGATCAAGAAAGTGGATTTGGATGGCGATGGCATGCTTGATTTCAAAGAGTTTAAGCAAATGATTAAGCTTGTCAACTAA 465 0.4516 MNQLADFGRIFQMFDHDDDGKISKEELLESVTKLGLGVMKHDLIQMIARLDANGDGYVDFDEFERLYKNVMGDDDVCGGGGDEEEDMKEAFQLFDQNGDGFVSGEELSSVLCSLGLRQGKKTLEDCKNMIKKVDLDGDGMLDFKEFKQMIKLVN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01057 154 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Arst6g01057 154 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Arst6g01057 154 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Arst6g01057 154 Pfam EF-hand domain pair 84 150 IPR002048 GO:0005509
Arst6g01057 154 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Arst6g01057 154 ProSiteProfiles EF-hand calcium-binding domain profile. 121 154 IPR002048 GO:0005509
Arst6g01057 154 SUPERFAMILY EF-hand 2 153 IPR011992 -
Arst6g01057 154 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Arst6g01057 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 82 151 - -
Arst6g01057 154 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Arst6g01057 154 Gene3D - 1 73 - -
Arst6g01057 154 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Arst6g01057 154 SMART efh_1 86 114 IPR002048 GO:0005509
Arst6g01057 154 SMART efh_1 6 34 IPR002048 GO:0005509
Arst6g01057 154 SMART efh_1 42 70 IPR002048 GO:0005509
Arst6g01057 154 SMART efh_1 125 153 IPR002048 GO:0005509
Arst6g01057 154 CDD EFh 86 151 IPR002048 GO:0005509
Arst6g01057 154 Gene3D - 74 151 - -
Arst6g01057 154 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Arst6g01057 154 FunFam Calmodulin 1 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01057 Arst-Chr6 9557718 9558345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01057 5 151 EF-hand Containing Proteins AT2G43290 55.782 4.17e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01057 K13448 - gmx:100806637 183.341