Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g00789 | ATGGGTACAGAGAGAAACAGGATAGCGTGCTTGTTCGACGTGGTTGACGACGGCACCGCTAAGATGTCGGAATCCGGCGATGGAGCCACCAACAACAACCACGTCATCAATCGGTGGACCGGGAGGCCGTTTTCGCAGAGGTACTTTGAGATTCTGGAGAAGAGGAAGAGTCTTCCCGTTTGGCACCAGAAACACCAGTTCTTGCAAACTCTCGCCCATAACCAGATTCTCATTCTCGTCGGTGAAACTGGCAGTGGCAAAACCACGCAGATTCCTCAATTTGTTTTGAATGCTGTTGATTTAGAAACACCAGATAAATGCAGGAAGATGATGATTGCGTGCACTCAGCCTCGCAGAGTGGCTGCAATGTCTGTTTCCCGGCGTGTGGCTGAAGAGATGGATGTAATGATTGGAGAAGAGGTTGGTTATAGTATCAGATTTGAAGACTGCAGCAGTTCAAGGACAGTTTTGAAGTATCTCACAGATGGTATGCTTTTAAGAGAAGCAATGACAGATCCACTCTTGGAACAATATAAAGTAATTATTCTCGATGAGGCTCATGAAAGGACTTTGGCTACAGATGTGCTATTTGGCCTTATAAAGGAAGTTCTTAAAAATAGAGATGACTTAAAGTTAGTCGTAATGAGTGCGACTCTAGAAGCTGAAAAGTTCCAGGGCTACTTTAGTGGTGCCCCTCTTATGAAAGTTCCAGGAAGGCTGCATCCTGTTGAAATTTTTTATACTCAGGAACCTGAAAGAGATTACCTGGAGGCTGCTATTAGGACGGTGATGCAGATACACATGGGCGAACCTTCTGGGGATATACTTGTTTTTCTAACGGGAGAGGAAGAGATAGAAGATGCATGTCGGAAAATATCTAAAGAAATTTCAAATTTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTATCCCTCTATTCTACTCTTCCCCCAGCTATGCAGCAGAAAATTTTTGAACCACCTCCACCTCCACTAAAGGAGGGTGGACCTCCTGGAAGGAAAATTATTGTGTCAACAAACATAGCTGAAACCTCCTTAACAATTGATGGCATTGTCTATGTTATTGACCCTGGTTTCTCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTTGAGTCTTTATTAGTGTCACCAATATCAAAAGCAAGTGCGCATCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTATACTGAGAAAAGTTTCAATAACGATCTACAGCCTCAGACCTATCCCGAAATTTTGAGATCAAATCTTGCCAACTCTGTTCTTACCTTGAAGAAACTGGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCCGCCCCTGAGACCTTGATGCGTGCATTGGAAGTGTTGAATTACTTGGGAGCACTGGACGATGATGGTACCTTAACAAAGTTGGGAGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCAAAGATGCTTATTGTGAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAATGTGTGCCATGCTTTCAGCCCCCAATTGCTTTGTCCGGCCTAGGGAAGCACAAAAAGCTGCTGATGAAGCTAAAACTAGGTTTGGGCACATTGATGGGGATCATCTCACACTCTTGAATGTCTACCATGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCAAAGGGCACTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAGCCTCAAGTTATGCAGCACCGACTTCAATAGCCGTGACTACTACATCAACATAAGGAAAGCTATGCTAGCTGGATATTTCATGCAGGTAGCTCATCTGGAGCGAACAGGACATTACTTGACAGTGAAAGACAATCAGGTGGTGCATTTGCATCCATCAACTTGTCTTGACCACAAACCTGAATGGGTTATCTATAATGAATATGTTCTTACTAGTCGAAATTTTATTCGCACTGTGACGGACATTCGTGGGGGGTGGTTGGTTGATATAGCACCACACTACTATGATTTGTCAAATTTTCCTCATTGCGAGGCCAAGGGTGTTCTTGAGAGACTCTACAAGAAGAAAAAGAAGGGAAAGGAGGAAGCCAGGAAGCACAAATGA | 2169 | 0.4361 | MGTERNRIACLFDVVDDGTAKMSESGDGATNNNHVINRWTGRPFSQRYFEILEKRKSLPVWHQKHQFLQTLAHNQILILVGETGSGKTTQIPQFVLNAVDLETPDKCRKMMIACTQPRRVAAMSVSRRVAEEMDVMIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMTDPLLEQYKVIILDEAHERTLATDVLFGLIKEVLKNRDDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVMQIHMGEPSGDILVFLTGEEEIEDACRKISKEISNLGDQVGPVKVVSLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIIVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANSVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGTLTKLGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSMCAMLSAPNCFVRPREAQKAADEAKTRFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNQRALKSADNVRQQLVRIMARFSLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSTCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGGWLVDIAPHYYDLSNFPHCEAKGVLERLYKKKKKGKEEARKHK | 722 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g00789 | 722 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 237 | IPR014001 | - | |
| Arst6g00789 | 722 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 54 | 608 | IPR027417 | - | |
| Arst6g00789 | 722 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 613 | 689 | IPR011709 | - | |
| Arst6g00789 | 722 | PANTHER | ATP-DEPENDENT RNA HELICASE | 45 | 691 | - | - | |
| Arst6g00789 | 722 | Gene3D | - | 11 | 239 | IPR027417 | - | |
| Arst6g00789 | 722 | Gene3D | - | 447 | 603 | - | - | |
| Arst6g00789 | 722 | Gene3D | - | 240 | 422 | IPR027417 | - | |
| Arst6g00789 | 722 | Pfam | AAA domain | 73 | 218 | IPR003593 | GO:0016887 | |
| Arst6g00789 | 722 | SMART | helicmild6 | 283 | 401 | IPR001650 | - | |
| Arst6g00789 | 722 | FunFam | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase | 14 | 239 | - | - | |
| Arst6g00789 | 722 | CDD | DEXHc_DHX15 | 46 | 236 | IPR044756 | GO:0003724|GO:0005524 | |
| Arst6g00789 | 722 | SMART | ultradead3 | 55 | 246 | IPR014001 | - | |
| Arst6g00789 | 722 | Pfam | Helicase conserved C-terminal domain | 265 | 400 | IPR001650 | - | |
| Arst6g00789 | 722 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 259 | 442 | IPR001650 | - | |
| Arst6g00789 | 722 | SMART | ha2_5 | 462 | 552 | IPR007502 | GO:0004386 | |
| Arst6g00789 | 722 | Pfam | Helicase associated domain (HA2) | 463 | 550 | IPR007502 | GO:0004386 | |
| Arst6g00789 | 722 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 240 | 422 | - | - | |
| Arst6g00789 | 722 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 446 | 554 | - | - | |
| Arst6g00789 | 722 | CDD | SF2_C_RHA | 241 | 409 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g00789 | Arst-Chr6 | 7080949 | 7084912 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst6g00789 | K12820 | - | gmx:100819776 | 1282.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Arst6g00789 | 6 | 7080949 | 7084912 | Arst6g00789 | 6 | 7080949 | 7084912 | ECH |