Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04310 ATGGGAACTTCGGTGCAGGTAACGCCACTGTGTGGAGTGTACAACGAGAACCCTCTCTCCTATTTGGTCTCCATCGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAATGACCATTTTGACCCTTCCCTCCTTCATCCCCTCTCCAAGGTAGCACCAACTATTGATGCTGTGTTGCTTTCACATCCGGATACCCTTCACCTTGGTGCCCTCCCATATGCCATGAAGCAGCTCGGACTTGCTGCTCCGGTATTTTCGACTGAGCCTGTCTATAGATTGGGCCTTCTCACCATGTATGACCAGTTCCTCTCAAGAAAGCAAGTATCAGAGTTTGATCTGTTCACACTTGATGATATTGATTCTGCATTCCAAAGTGTAACAAAGCTAACATACTCTCAAAATCATCATTTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCACGTTGCTGGACATTTGTTGGGAGGCACTATATGGAAAATTACAAAGGATGGTGAGGATGTGATATATGCTGTTGATTTTAATCATCGGAGGGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGAGACCAGCTGTTCTAATAACAGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGATAAAGAATTTGGTGATATCTTAAAGAAGACTCTAAGGGCAGGTGGCAATGTATTACTTCCTATTGACACTGCTGGACGGGTGTTGGAACTTATTTTGATTTTAGAATCGTACTGGGCTGACGAAAACTTGACCTATCCTATATACTTTCTGACTTATGTTGCATCCAGCACAATAGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCCTTTGAACAAACTCGTGAGAATATATTTCTTCTCAAGTATATCACACTTCTGATTAACAAGGCTGAGCTTGACAATGCTCCAGATGGTCCAAAGGTTGTCCTGGCATCCATGGCCAGCTTGGAAACTGGTTTTTCTCATGATATATTTGTTGAGTGGGCCAGCGACGTGAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTATGCAACACTAGCTCGTATGCTTCAGGCTGATCCACCTCCAAAAGCCGTCAAAGTCACTGTGTCAAAGCGGGTTCCTTTAGTTGGGGACGAACTAATTGCCTATGAAGAAGAGCAAAATAGAATAAAGAAAGAAGAAGCTTTAAAAGCTAGTCTTATGAAAGAAGAAGAATTGAAAGCATCTCAGGGGCCTGATAATAATGTTAGTGATCCAATGGTTGTTGATGCTAGCAATGATCATCTATCAGCTGAAGCTGCTGGTCCACGAGGTGGAGGATACAGGGACATATTAATAGATGGGTTTGTTCCACCTTCAACAAGCATTGCCCCAATGTTTCCTTGTTATGAGAATACATCAGAGTGGGATGATTTCGGTGAAGTCATAAATCCAGATGATTATGTAATAAAGGATGAAGACATGGATCAGGGAGCAATGCATGCAGGAGGTGATATAAATGGAAAACTAGATGAAGGTGCTGCAAGTTTGATACTTGATACAAAGCCATCAAAAGTCATATCTGATGAAAGGACTGTACAAGTCAGATGTTCATTGGTGTATATGGACTTCGAAGGCCGGTCAGATGGAAGATCCATTAAAAATATTCTTTCCCATGTGGCTCCCCTAAAGCTTGTTTTGGTGCATGGATCAGCTGAAGCTACAGAACATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCTCACGTCTATGCTCCACAAATTGAAGAGACAATTGATGTTACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGTTGATGAGTAATGTACTCTTCAAAAAGCTGGGAGAATATGAAATAGCTTGGGTTGATGCTGAAGTTGAGAAAACAGAAAATGAAATGCTTGCACTAGTCCCTGTCTCTTCACAAGTTCCTCCCCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATTTCAAGCAGTTCCTCTCAAGCAAGGGTGTTCAGGTGGAATTTTCTGGTGGGGCTTTGCGATGTGGAGAATATGTAACTCTCCGAAAAGTCGGCGATACAACTCAGAAGGGCGGAAGTTCTGGTACTCAGCAAATTGTTATTGAAGGTCCTTTGTGCGAGGATTATTATAAAATTCGTGAATATCTTTATTCACAATTTTATCTGCTTTAG 2223 0.4193 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLHPLSKVAPTIDAVLLSHPDTLHLGALPYAMKQLGLAAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSVTKLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRRERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPIDTAGRVLELILILESYWADENLTYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFLLKYITLLINKAELDNAPDGPKVVLASMASLETGFSHDIFVEWASDVKNLVLFTERGQYATLARMLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLMKEEELKASQGPDNNVSDPMVVDASNDHLSAEAAGPRGGGYRDILIDGFVPPSTSIAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQGAMHAGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDAEVEKTENEMLALVPVSSQVPPHKSVLVGDLKLADFKQFLSSKGVQVEFSGGALRCGEYVTLRKVGDTTQKGGSSGTQQIVIEGPLCEDYYKIREYLYSQFYLL 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04310 740 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Arst5g04310 740 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 585 IPR011108 -
Arst5g04310 740 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Arst5g04310 740 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Arst5g04310 740 Gene3D - 7 256 IPR036866 -
Arst5g04310 740 SMART Beta_Casp_2 242 365 IPR022712 -
Arst5g04310 740 Pfam Cleavage and polyadenylation factor 2 C-terminal 646 737 IPR025069 -
Arst5g04310 740 Pfam Beta-Casp domain 242 365 IPR022712 -
Arst5g04310 740 Coils Coil 392 412 - -
Arst5g04310 740 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Arst5g04310 740 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 739 IPR027075 GO:0005847|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04310 Arst-Chr5 105017051 105023429 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04310 K14402 - gmx:100777002 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04310 5 105017051 105023429 Arst5g04310 5 105017051 105023429 ECH