Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04246 ATGGGGAATTCATTTGGGTGCTCAGCCTCTGGGGAGAGGCTGGTGTCGGCGGCAAGGGACGGCGATTTGGTTGAGGCCAAGATGCTTCTTGAATGCAACCCTTGTCTTGCTAAATACTCAACCTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCTTTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGGAACTATTGCGGCCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTTCAAACCCTTCTGCTCTTCAGATGCAATGTTGTGAGATCAGATTATCTCAGTGGGAGGACTGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGCATTAGACTCGTCATGGCTGACTTTGTTCCAAGTGCTCCGTATGAGGCTTTACATGCTCCCACGGATGCTGACATTGATGACGGATCAAATGTTAAAAGCAAACATGAACAAAGCGCGCTGTCCAAGTTTGTAAACAAGGCGGCTGATGCCGGTATTACAGCCCTTCATATGGCTGCCTTAAATGGCTATTTCGATTGTGTACAACTGCTTCTTGATCTCAATGCAAATGTCTCAGCTGCGACATTTCACTATGGAACGGCAATGGATTTAATAGGAGCCGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGAAATTTGAAATGCTGTCAGATCCTCCTTTCAGGAGGTGCAAGTCGGACAGCTTTGAATTGCAATGGATGGCTTCCACTCGATGTTGCGAGGATGTGGGGGCGTCACTGGCTTGAACCAATATTAGCACCCACTTCTGAAGCTACAATACCATCATTCCCTCCATCAAATTATTTGTCCTTGCCACTTATGAGTGTGCTCAACATAGCCAGAGAGAGTGGATTGCAATCATCTCCTACCTCTTCCGACGAAATTGATTTTTGTGCCGTTTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTCGACATGAGCTGTGTGTTAAATGTGCACTCTATCTTTGCTCAACGAGCAATGTTTCGTCCGAAATGCTCGGCCCGCCGGGCTCCATCCCTTGCCCTCTATGTAGACGTGGAATTGTCTCTTTTGTCAAATTACCAGGTACACAAGCAAGAGAGACTAAAGTCAACGGATCGCTCGGCTTATGTACTCCATGCATGCTACATCCACGTGACATAAATAGGCCATCTTTCTTTCATACACCGGAGATTCGAAAGAATCGTGTTGCTTCTATTCCTTCAGAGATGCTTTGCCCTGTGACTTGTAGTCCATTTACATCAGTTGCACTTCCTCTATGTACCTGCAATGATGGTCCTTGTCCACCATTTGAGCCACGAGAAGTTGAAGCTCAAGATGAATCGCCTCGTCACTCACAAGTATCATCAACGGATCAGGATAAAATGGAAGGGCCAAGATTGGAGAAAACAACATGCTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAGATCAACGCTTGA 1539 0.4672 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVRSDYLSGRTALHFAAVNGHVRCIRLVMADFVPSAPYEALHAPTDADIDDGSNVKSKHEQSALSKFVNKAADAGITALHMAALNGYFDCVQLLLDLNANVSAATFHYGTAMDLIGAGSTPLHYAACGGNLKCCQILLSGGASRTALNCNGWLPLDVARMWGRHWLEPILAPTSEATIPSFPPSNYLSLPLMSVLNIARESGLQSSPTSSDEIDFCAVCLERPCSVAAEGCRHELCVKCALYLCSTSNVSSEMLGPPGSIPCPLCRRGIVSFVKLPGTQARETKVNGSLGLCTPCMLHPRDINRPSFFHTPEIRKNRVASIPSEMLCPVTCSPFTSVALPLCTCNDGPCPPFEPREVEAQDESPRHSQVSSTDQDKMEGPRLEKTTCSSMFWGRRSCSREHQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04246 512 Gene3D - 221 273 IPR036770 -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Arst5g04246 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Arst5g04246 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Arst5g04246 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Arst5g04246 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Arst5g04246 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Arst5g04246 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Arst5g04246 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Arst5g04246 512 SUPERFAMILY RING/U-box 318 375 - -
Arst5g04246 512 Gene3D - 107 220 IPR036770 -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Arst5g04246 512 MobiDBLite consensus disorder prediction 458 485 - -
Arst5g04246 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Arst5g04246 512 Pfam Ankyrin repeat 221 252 IPR002110 GO:0005515
Arst5g04246 512 Pfam Ankyrin repeats (many copies) 177 217 IPR002110 GO:0005515
Arst5g04246 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Arst5g04246 512 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 112 298 - -
Arst5g04246 512 MobiDBLite consensus disorder prediction 458 486 - -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Arst5g04246 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Arst5g04246 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Arst5g04246 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Arst5g04246 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Arst5g04246 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Arst5g04246 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Arst5g04246 512 Gene3D - 8 106 IPR036770 -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Arst5g04246 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Arst5g04246 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04246 Arst-Chr5 104462437 104466481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04246 17 287 Miscellaneous Gene Families AT5G02620 26.449 2.90e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04246 K19044 - gmx:100812809 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04246 5 104462437 104466481 Arst5g04246 5 104462437 104466481 ECH
Arst5g04246 5 104462437 104466481 Arst9g03152 9 109088327 109092800 PCT