Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04165 ATGGCTTCTTCGCACCCAAAGAATGTGGGAATCCTTGCCATGGACATCTACTTTCCTCCCACATGCGTAAAACAGGAAGCTTTGGAGGCTCACGATGGGGCCAGCAAAGGGAAATACACTATTGGGCTTGGACAAGATTGCTTGGCATTCTGCACTGAGGTTGAAGATGTTATCTCTATGAGCTTGACAGCTGTATCCTCGCTTCTTAAAAAGTATAAGATTGATCCGAAACAAATTGGACGCATGGAAGTTGGTAGTGAAACTGTCATTGACAAAAGCAAATCCATTAAGACCTTCCTGATGCAACTCTTCGAGGAGAGTGGTAATACTGACATCGAAGGTGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTCTGTTCAATTGCGTGAATTGGGTGGAGAGTAGTTCATGGGATGGTCGCTATGGACTTGTCATATGTGCAGATAGCGCGGTCTACGCTGAAGGACCTGCACGTCCTACCGGAGGAGCAGCTGCTATTGCCATACTTGTGGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAGTTCAGAGGCAGTCACATGGCTCATGCCTATGACTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTTGTTGATGGAAAACTCTCGCAGAATTGTTATCTCATGGCACTTGATTCTTGCTACAAGGTTTTCTGTGAGAAATTCGAAAAGTTGGAGGGGAAGCCCTTTTCAATGGCAGAGGCTGATTACTTTGTGTTTCATTCTCCATATAACAAGCTTGTCCAAAAAAGCTTTGGTCGGCTATACTACGATGACTTCCTGAGAAATCCCAGTTTTGTTGATGAAGCTGCCAGAACATCCTTGGAACCTTATAAATCACTATCGGGTGACGAAAGCTACAATGGTCGTGATCTTGAAAAGGCAAACCAGCAAGCCTCGAAAAAGATATATGACACGAAGGTGCAGCCCAGCACGTTAATACCGAAAGAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCATCACTCCTTCACAATGAGAACAGCTCACTGGTTGGTAAACGTGTAGTTATGTTCTCATATGGAAGTGGTTTAACGGCTACAATGTTCTCCTTCAAGATTCAAGAAGGTCAAGGCCCCTTTACTTTGTCCAACATTGTAACATTGATGGATGTGGCTGGCAAGTTGAAGCAGAGAGTTGAGTTTCCTCCTGAAAAATTTGTAGAAACAATGAAGCTGATGGAACACCGATATGGGGCAAAGGACTATGTGACAAGCGGTGACTGTAGCAACTTACCTGCAGGCACCTTCTATCTTACCAAAGTTGATTCCATGTACCGGAGATTTTATGCCAGAAAGGACACTACCAGCACATGA 1377 0.4423 MASSHPKNVGILAMDIYFPPTCVKQEALEAHDGASKGKYTIGLGQDCLAFCTEVEDVISMSLTAVSSLLKKYKIDPKQIGRMEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVICADSAVYAEGPARPTGGAAAIAILVGPDAPIAFESKFRGSHMAHAYDFYKPNLASEYPVVDGKLSQNCYLMALDSCYKVFCEKFEKLEGKPFSMAEADYFVFHSPYNKLVQKSFGRLYYDDFLRNPSFVDEAARTSLEPYKSLSGDESYNGRDLEKANQQASKKIYDTKVQPSTLIPKEVGNMYTASLYAAFASLLHNENSSLVGKRVVMFSYGSGLTATMFSFKIQEGQGPFTLSNIVTLMDVAGKLKQRVEFPPEKFVETMKLMEHRYGAKDYVTSGDCSNLPAGTFYLTKVDSMYRRFYARKDTTST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04165 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Arst5g04165 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Arst5g04165 458 SUPERFAMILY Thiolase-like 179 452 IPR016039 GO:0016746
Arst5g04165 458 CDD init_cond_enzymes 8 372 - -
Arst5g04165 458 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 4 454 - -
Arst5g04165 458 NCBIfam hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Arst5g04165 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 456 - -
Arst5g04165 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Arst5g04165 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 456 - -
Arst5g04165 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Arst5g04165 458 Gene3D - 4 455 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04165 Arst-Chr5 103817752 103822055 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04165 K01641 - gmx:100794889 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04165 5 103817752 103822055 Arst5g04165 5 103817752 103822055 ECH