Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03297 ATGGATTCCGATGATCAATCGCCACAAATCAAAGGTGTTGTTATAATCTCCCTTCCACCACCAGATAACCCTTCTTTGGGTAAAACCATCACTGCTTTTACTTACACTGAACCTCAATCGCAATCTCCTTCTCTTCAATCTCAACCCCAACACCAAAATTTTCACAACAATTCTCAATCTAGTAGTGATCATGATAACAATAATGAATTTCATTCTAACCCATCATCAAGTCCGGAGCTTCAATTCTCTTTCAGGAAGCTCTTCTTTGGAACCCCAACAAAGATCTTCACTTTCTTTAGTGTCCTGCTATTTGCTCTTTTTCTGTATGGTTCCTTCTCTTCTAATACACTTCAGGAACTGAGTGGTCTTAGGAACAACGACGATCATGATGATGGCCCAAACTCTTTTCTATTCCCTTTGTTTCCTAAAATTGGGGTTCATGGTCAGAAGGATTTGAGACTCAAAGTGAGGAATTTTGTTGACACGCAAAAAGAGAATTTTGTTGTGACTCAAAGAAAAGCCGATGTATTTCCTAAAGTTGCAGATTCTTCTTCTGTTTTTCCAATCAGTGGCAACATTTTTCCAGATGGGTTATATTACACATATCTACAAGTAGGAAATCCTCCAAAACGTTATTTTCTTGATGTCGATACAGGAAGTGACTTAACTTGGATACAGTGTGATGCTCCATGCAGAAGTTGTGCAAAGGGAGCACATGTACCGTACAAGCCGGTAAGATCCAACATAGTTCCATCTGTGGACTCTATCTGCTTTGAAGTACAGAAAAATCAGAGGAATGAATATCAAGGAAGTCTTCAGCAGCAGTGTGATTATGAGATCCAATATGCAGATCATAGTTCCTCCTTGGGGGTTCTCATTAGAGACGATGTTCATCTTTTGACTACTAATGGATCGAAAGCTAAGTTAAATTTCGTTTTTGGGTGTGGATATGATCAAGATGGCTCACTTCTGAATACGTTGGCAAAAACAGATGGAATCATGGGACTTAGCAGGGCGAAAGTGAGCCTGCCGTTCCAGTTGGCGAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCCTAAGCAAGGATGGAGTTGGTGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGACTTGGGCTCCTATGGCCAATACAGATTTATACCAAGCTGAGATTCTTGGGATGAATTACGGGTATAGGCCCCTCAGTTTTGATGGCAACAGCAAAGTAGGAAAGGTGATTTTTGACAGTGGCAGTTCTTATACGTATTTTCCAAAAGTTGCATACTTGGATCTTGTTGCTTCTCTCGAAGAAGTTTCTGGATTGGGACTCGTTCAAGACGAGTCAGATACGACCTTGCCTATTTGCTGGCAAGCTAATTTCCCGATAAGATCTGTCAAAGATGTCAAGAATGTATTCGATACCTTGAGTCTTCGATTTGGAAGCAAGTGGTGGATTTTGTCGACGGTGTTTCAGATTCCTCCGGAGGGTTACTTGATTATTAGTAAAAAAGGCAATGTATGCTTGGCTATCCTTGATGGTAGCAATGTACATGATGGATCCACCATTATAATTGGAGACATTTCATTAAGAGGATATATGCTTGTGTATGACAATGTGAATAAAAAAATTGGTTGGGAGAGAGCAGAATGTGGCATGCCAAGAAGAATCAGAAAGAATCAGAATCTCTTGACTGATAGCATGCTATAG 1728 0.4028 MDSDDQSPQIKGVVIISLPPPDNPSLGKTITAFTYTEPQSQSPSLQSQPQHQNFHNNSQSSSDHDNNNEFHSNPSSSPELQFSFRKLFFGTPTKIFTFFSVLLFALFLYGSFSSNTLQELSGLRNNDDHDDGPNSFLFPLFPKIGVHGQKDLRLKVRNFVDTQKENFVVTQRKADVFPKVADSSSVFPISGNIFPDGLYYTYLQVGNPPKRYFLDVDTGSDLTWIQCDAPCRSCAKGAHVPYKPVRSNIVPSVDSICFEVQKNQRNEYQGSLQQQCDYEIQYADHSSSLGVLIRDDVHLLTTNGSKAKLNFVFGCGYDQDGSLLNTLAKTDGIMGLSRAKVSLPFQLASKGLIKNVVGHCLSKDGVGGGYMFLGDDFVPYWGMTWAPMANTDLYQAEILGMNYGYRPLSFDGNSKVGKVIFDSGSSYTYFPKVAYLDLVASLEEVSGLGLVQDESDTTLPICWQANFPIRSVKDVKNVFDTLSLRFGSKWWILSTVFQIPPEGYLIISKKGNVCLAILDGSNVHDGSTIIIGDISLRGYMLVYDNVNKKIGWERAECGMPRRIRKNQNLLTDSML 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03297 575 Pfam Xylanase inhibitor C-terminal 413 553 IPR032799 -
Arst5g03297 575 PANTHER ASPARTYL PROTEASES 121 551 IPR001461 GO:0004190|GO:0006508
Arst5g03297 575 Gene3D Acid Proteases 178 375 IPR021109 -
Arst5g03297 575 SUPERFAMILY Acid proteases 191 557 IPR021109 -
Arst5g03297 575 FunFam Aspartyl protease family protein 176 375 - -
Arst5g03297 575 Pfam Xylanase inhibitor N-terminal 199 375 IPR032861 -
Arst5g03297 575 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 419 430 IPR001969 GO:0004190|GO:0006508
Arst5g03297 575 MobiDBLite consensus disorder prediction 27 75 - -
Arst5g03297 575 MobiDBLite consensus disorder prediction 1 75 - -
Arst5g03297 575 PRINTS Pepsin (A1) aspartic protease family signature 205 225 IPR001461 GO:0004190|GO:0006508
Arst5g03297 575 PRINTS Pepsin (A1) aspartic protease family signature 529 544 IPR001461 GO:0004190|GO:0006508
Arst5g03297 575 PRINTS Pepsin (A1) aspartic protease family signature 419 430 IPR001461 GO:0004190|GO:0006508
Arst5g03297 575 ProSiteProfiles Peptidase family A1 domain profile. 199 553 IPR033121 -
Arst5g03297 575 Gene3D Acid Proteases 382 559 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03297 Arst-Chr5 91227775 91232913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03297 183 557 Miscellaneous Gene Families AT1G77480 44.125 2.76e-102 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03297 - - gmx:100810687 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03297 5 91227775 91232913 Arst5g03297 5 91227775 91232913 ECH