Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02019 ATGGCTGATGATGGCTGTGCGTGGAACCCTCATGGTCATCTTCCTCTAATCCTCTATAAATACTCTCTTGTTATCTCCAACAAGTGCTCAAAACATTACTCAAAGACTCTCATATATCCAAGAAATACAGTAATAGCTTTCGTCATCAATATGAAAGCATATCTTCTCTCCCTGTTACTCATCTTTGTCCTCTTCGACACCGTCCCAACACTCTCATCGGCAATAAATTTCAGACCATCTGACAAACTTATCTCCGATTTCAACAATAATAAAGGAAGGTTCGAGAAATTCCCATGGAAGATCGTTAACCATTTCAAGAATACAGATGAAAAGGGAAGATTAAAAGAACGAGAACTTCCTACCAATTTTACAGAAGTTCTTGAAAAGTGGCTCAAATTAAAGTCAGAGATCGAGAGTAGGTCAATTAGTGTGGAAATTGACGGCCTCAAGACGGTGAAAGAGTATTTGTCCAGATACGGATACATGCCGCGCTCCAAATCATTCACCAACGCCCTCGAACCCCGCACGGAATCAGCTATCAAGACCTACCAGAAGTTCTTCAATCTGAAAGCTAGTGGAATGTTAGACGAAGAAACTGTTGAACAGATGGCCCTGCTACGGTGCGGTGTGCCGGACGTGAATTTCACCTTCCACCTCTCCGAAACCCGTGGCTTGTCATGGCCTCTAGGCACGGGCTGGTTCCCTAAGCCCCGCAGGGAGCTCACCTACAGTTTTCCTCGAGCGAGCAAGTTCTCACCGAAGGCGATCAATGTGTTCAGAGATTCGTTCAAGCGGTGGTCGCTTGCCGTAGGGGTGGTCAATTTCACCGAGACGAAGGAGTACGATACGGCGGACATCAAGATTGCGACATTGCCTTCCGGCAGCAAACTATTTGGAGTGGAAATGGTGGGGGCCACAGTTATGGTAAAGCAGTCCTATTATCATAAGATTGTTAATGGCCGTCGTTCTTCTTCTGATCACCATTCTCGTGATGGTGGCGATGGTCTTGCTTATGGGATCCTGTTTTTTGATAACTCTAAATACTGGGCGTATCCCGCCGACAACTTGGCCAGCAAGCGGCTGTGGAAGTTCGGGGTGGTTGACTTGGAGACGGTGGTGATGCACCAGATTGGTCATCTCGTGGGGCTTCGCCACTCGTCTGACAAGGATTCCATCATGTATCCTTCCATTTTGCCTGACCAGCAAAGGAAGGTGCACCTTTCTAAGAATGATAAAGAGCAGATCCACAAAGTTTATTTCTCCAGCGGGCCCTAA 1275 0.4667 MADDGCAWNPHGHLPLILYKYSLVISNKCSKHYSKTLIYPRNTVIAFVINMKAYLLSLLLIFVLFDTVPTLSSAINFRPSDKLISDFNNNKGRFEKFPWKIVNHFKNTDEKGRLKERELPTNFTEVLEKWLKLKSEIESRSISVEIDGLKTVKEYLSRYGYMPRSKSFTNALEPRTESAIKTYQKFFNLKASGMLDEETVEQMALLRCGVPDVNFTFHLSETRGLSWPLGTGWFPKPRRELTYSFPRASKFSPKAINVFRDSFKRWSLAVGVVNFTETKEYDTADIKIATLPSGSKLFGVEMVGATVMVKQSYYHKIVNGRRSSSDHHSRDGGDGLAYGILFFDNSKYWAYPADNLASKRLWKFGVVDLETVVMHQIGHLVGLRHSSDKDSIMYPSILPDQQRKVHLSKNDKEQIHKVYFSSGP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02019 424 Pfam Putative peptidoglycan binding domain 148 203 IPR002477 -
Arst5g02019 424 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 237 419 - -
Arst5g02019 424 SMART col_5 230 421 IPR006026 GO:0006508|GO:0008237|GO:0008270
Arst5g02019 424 SUPERFAMILY PGBD-like 142 213 IPR036365 -
Arst5g02019 424 Gene3D Collagenase (Catalytic Domain) 139 423 IPR024079 GO:0008237
Arst5g02019 424 PANTHER MATRIX METALLOPROTEINASE 141 419 - -
Arst5g02019 424 Pfam Matrixin 240 419 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Arst5g02019 424 PRINTS Matrixin signature 203 216 IPR021190 GO:0004222|GO:0006508|GO:0008270
Arst5g02019 424 PRINTS Matrixin signature 372 397 IPR021190 GO:0004222|GO:0006508|GO:0008270
Arst5g02019 424 PRINTS Matrixin signature 407 420 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02019 Arst-Chr5 28261732 28263419 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02019 - - adu:107488935 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g02019 5 28261732 28263419 Arst5g02019 5 28261732 28263419 ECH