Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02011 ATGGGAATTCTTCAATGTCCCTCTTGTTGCCACTACTCATCATCATCACAACACCATGAAGATCACCAACAACAATCCCATCACTCAAATTCCAACAATACCCTTCTCCATTCAGAATCATCAACCTCTTCCTCTCTTTCTTCACAACCAAGTCTACCTTCAGTTCCTTCCCTAACAACCTCACAACAACTCCAACAACAAGAGCTTGTAACCACCATCAACGGTCACTCCTCCGCAATCTTCTGCCTCGCACTCCACGGTAAGTTTCTCTACAGCGGATCCTCCAGCAGCGAGATAAGGAGACACCGAAAAGACACTTTTGCCCCTGATCACAACGTTCTTGCAACAACCACCAACAGTGCCGTTAAGTCCATAACCGTTTTCGGTGATAAGCTTTTCACCGCTCACCAAGACCACAAAATCCGCGTCTGGAAAATCCAAGAACAAGAACAAGAACCCTACAAATGCATAGCGACGCTTCCAACGTTCAACGACCGAATCTGGAAGCTCTTCTCTTCCAAGAACTACGTTCAAGTTCGGCGCCACAAGAAGTCCACGTGGGTGCACCACGTGGACACAGTCTCCGCCGTCGCCATATCCGTCGATGGAACACTCTTATACTCCGCTTCGTGGGATCGTACCTTCAAGATTTGGCGAACCTCCGATTTCAAGTGCTTGGAGTCCGTTAACGCGCACGAAGACGCCATCAACGCGCTGGTGGTTTCACGCGCCGGTGTAGTTTACACTGGATCAGCTGATAAGAAGATAAAAATATGGAAGAAACTTGAGAATTCAAAGAGGCATGCGCTTGTGGGGACGTTGGAGAAGCATAAATCAGCGGTGAACGCGTTGGCTCTCAGCACCAATGGTTTGGTTTTGTACTCCGGCGCGTGTGATAGGTCGATTCTGGTGTGGGAGAAGGAGGAGAAGGAGGAAGGAGGAGGCGATGGAAATGTGAAGATGGTGGTTGTTGGAGCGTTGAGAGGACACACAAAAGCAATACTGTGTTTGGTTGCAATGGCGGATTTGGTCGTGAGTGGTTCGGCGGATAATAGTGTTAGGGTGTGGCGGCGGAGAGGGATTAGTGTTAATAGTGAGAAGAGTTGTTATTCTTGTTTGGCTGTGTTGGAAGGACATAGAAGACCGGTGAAGTGTTTGGCTGTGGCGGTTGAATCCGCCGACAACTGTGGTGGTGATGATGAGAATAGTGGCGGTGGCGGTGGTGGTAATTCTTATTTGGTTTATAGTGGTAGTTTGGACTGTGGCATTAGAGTTTGGAGAATAAGGGTTCCCTTGTTTTGA 1302 0.4846 MGILQCPSCCHYSSSSQHHEDHQQQSHHSNSNNTLLHSESSTSSSLSSQPSLPSVPSLTTSQQLQQQELVTTINGHSSAIFCLALHGKFLYSGSSSSEIRRHRKDTFAPDHNVLATTTNSAVKSITVFGDKLFTAHQDHKIRVWKIQEQEQEPYKCIATLPTFNDRIWKLFSSKNYVQVRRHKKSTWVHHVDTVSAVAISVDGTLLYSASWDRTFKIWRTSDFKCLESVNAHEDAINALVVSRAGVVYTGSADKKIKIWKKLENSKRHALVGTLEKHKSAVNALALSTNGLVLYSGACDRSILVWEKEEKEEGGGDGNVKMVVVGALRGHTKAILCLVAMADLVVSGSADNSVRVWRRRGISVNSEKSCYSCLAVLEGHRRPVKCLAVAVESADNCGGDDENSGGGGGGNSYLVYSGSLDCGIRVWRIRVPLF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02011 433 SMART WD40_4 320 357 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 369 427 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 110 145 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 267 306 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 66 103 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 222 260 IPR001680 GO:0005515
Arst5g02011 433 SMART WD40_4 180 219 IPR001680 GO:0005515
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 356 IPR001680 GO:0005515
Arst5g02011 433 SUPERFAMILY WD40 repeat-like 65 428 IPR036322 GO:0005515
Arst5g02011 433 Gene3D - 178 317 IPR015943 GO:0005515
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Arst5g02011 433 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Arst5g02011 433 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Arst5g02011 433 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Arst5g02011 433 Gene3D - 318 431 IPR015943 GO:0005515
Arst5g02011 433 MobiDBLite consensus disorder prediction 17 60 - -
Arst5g02011 433 Gene3D - 8 177 IPR015943 GO:0005515
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 356 - -
Arst5g02011 433 Pfam WD domain, G-beta repeat 371 426 IPR001680 GO:0005515
Arst5g02011 433 Pfam WD domain, G-beta repeat 68 145 IPR001680 GO:0005515
Arst5g02011 433 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Arst5g02011 433 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Arst5g02011 433 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Arst5g02011 433 Pfam WD domain, G-beta repeat 325 356 IPR001680 GO:0005515
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 306 IPR001680 GO:0005515
Arst5g02011 433 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 429 IPR045182 -
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Arst5g02011 433 CDD WD40 69 427 - -
Arst5g02011 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 260 IPR001680 GO:0005515
Arst5g02011 433 MobiDBLite consensus disorder prediction 27 60 - -
Arst5g02011 433 FunFam BnaA09g28200D protein 176 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02011 Arst-Chr5 27892353 27893888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02011 122 365 Acyl Lipid Metabolism Gene Families AT3G18860 24.088 1.09e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02011 - - gmx:100784166 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g02011 5 27892353 27893888 Arst5g02011 5 27892353 27893888 ECH