Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01901 ATGGCGGCAGAAGAGAGCATAGTTGACTCCACCGATTTTCCCGTCAAGAGGCCAAGGGAGAACGAAGAGAATGGCTCAGCTTCCGCCCTCACCGTCGACGCCGCCGCAAAGGACCCGAACGGAATCTCTGCCGTTATCCCTGGCTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCTCACTCGTTGAAGGTGGAAAAGATTTTGTTTCAAGAGAAGTCTGACTACCAGAATGTCATGGTCTTCCAGTCTTCGACATATGGCAAGGTTCTTGTTCTAGATGGAGTCATTCAGCTGACAGAAAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTTGCTCGATTCCAGATCCAAAAAAGGTTTTGGTTATTGGGGGAGGTGACGGTGGAGTCCTACGGGAAGTAGCACGCCATTCTTCTGTAGAGAAGATAGACATCTGCGAGATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGATGTAGCTATAGGTTATGAGGACCCACGTGTAACACTTCATGTTGGCGATGGTGTTGCATTTTTGAAGGCAGTCCCAGAAGGAACCTATGATGCAATTATAGTGGATTCGTCTGATCCTATTGGTCCTGCCCAAGAGCTTTTCGAGAAACCTTTTTTCGAGTCGGTTGCAAGGGCTCTTCGTCCAGGAGGTGTTGTGTGTACTCAAGCAGAAAGTATTTGGCTCCACATGCATATCATCGAGGACATCGTTGCAAATTGTCGCCAGATATTTAAAGGTTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCGAGTGGGATGATTGGTTTCATGCTTTGCTCAACTGAGGGGCCTGCTGTAGATTTCAAGCATCCGGTGAATCGCATAGATGAGAATGATCAGAACTTGGCAAGGCCATTGAAATTTTACAACTCTGAGCTTCATACAGCTGCGTTCTGTTTGCCATCTTTTGCTAAGAGGGCCATTGGTTCCAAAGCAAACTGA 1011 0.4728 MAAEESIVDSTDFPVKRPRENEENGSASALTVDAAAKDPNGISAVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPDPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPDVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNRIDENDQNLARPLKFYNSELHTAAFCLPSFAKRAIGSKAN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01901 336 Pfam Spermidine synthase tetramerisation domain 48 102 IPR035246 -
Arst5g01901 336 FunFam Spermidine synthase 1 100 336 - -
Arst5g01901 336 Pfam Spermine/spermidine synthase domain 105 292 - -
Arst5g01901 336 CDD AdoMet_MTases 125 236 - -
Arst5g01901 336 MobiDBLite consensus disorder prediction 1 27 - -
Arst5g01901 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 331 IPR029063 -
Arst5g01901 336 Gene3D Spermidine synthase, tetramerisation domain 41 99 IPR037163 -
Arst5g01901 336 PANTHER SPERMIDINE/SPERMINE SYNTHASE 40 333 IPR001045 GO:0003824
Arst5g01901 336 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
Arst5g01901 336 FunFam Spermidine synthase 1 40 99 - -
Arst5g01901 336 Gene3D Vaccinia Virus protein VP39 100 336 IPR029063 -
Arst5g01901 336 Hamap Polyamine aminopropyltransferase [speE]. 48 332 IPR001045 GO:0003824
Arst5g01901 336 PIRSF Spermidine_synth 38 336 IPR030668 GO:0006595
Arst5g01901 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 284 IPR030374 -
Arst5g01901 336 NCBIfam spermidine synthase 49 326 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01901 Arst-Chr5 24533307 24537143 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01901 K00797 - gmx:100792107 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01901 5 24533307 24537143 Arst5g01901 5 24533307 24537143 ECH