Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01848 ATGATTCAGCCAAACAAAAGAAGCAGGGAAATGGAAGATATCTCGAAGCAGAAAAGGCTTCAGATTTCCTTAAATTACAATGTCTGCCAAGATGATGCTGATCGATCAGCAAGCATTCCGAATCCTAATCCTGTGTCAACAGGATTAAGGCTTTCATATGATGACGATGAGCGCAACTCATCTGTCACTTCCGCAAGTGGAAGCATGAATGCTGCACCCTCTATCTTGCTGTCACTCGGTGATAATATCAGAAGCGAGCTTGATAGGCAGCAAGAAGAGTTAGACCAATATATTAAACTTCAGAAGGAACAATTGTCAAAAGGAGTGAGGGACATGAAGCAAAAACACATGGCTTCTCTCCTTACTTCGATTGAAAAAGGCGTTACTAAGAAGCTAAAGGAGAAAGATATAGAGATTGATAACATGAACAGAAAAAATAGGGAGCTAGCAGATAGAATAAAGCAGGTGGCTATGGAAGCACAAAACTGGCACTACAGAGCCAAGTACAACGAGTCAATCGTCAATGTGTTAAAAAACAATCTCCAGCAGGCAATATCTCAAGGAGTTGAACAAGGGAAGGAAGGATTCGGAGACAGCGAAATTGACGACACTGCTTCCTACATAGATCCTAATAACCTCTTCAGCGTTGCAGGCGCACAGCATATGAAATCCACGTACAAGAATTACCAAGGCATGGAGAACCTGAGTTGCCGAGCGTGCAAGGCGAAGGAGGTTTGCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAGGACTGTGATGGATTTATCAATGTTTGTCCTGTTTGCCAATTGATTAAGACTGGAAGTGTGGAGGTATATCTCTCATAA 855 0.4257 MIQPNKRSREMEDISKQKRLQISLNYNVCQDDADRSASIPNPNPVSTGLRLSYDDDERNSSVTSASGSMNAAPSILLSLGDNIRSELDRQQEELDQYIKLQKEQLSKGVRDMKQKHMASLLTSIEKGVTKKLKEKDIEIDNMNRKNRELADRIKQVAMEAQNWHYRAKYNESIVNVLKNNLQQAISQGVEQGKEGFGDSEIDDTASYIDPNNLFSVAGAQHMKSTYKNYQGMENLSCRACKAKEVCMLLMPCRHLCLCKDCDGFINVCPVCQLIKTGSVEVYLS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01848 284 PIRSF SBP1_RNase_bind 2 284 IPR017066 -
Arst5g01848 284 Coils Coil 80 107 - -
Arst5g01848 284 CDD mRING-HC-C3HC5_CGRF1-like 237 271 - -
Arst5g01848 284 Coils Coil 132 159 - -
Arst5g01848 284 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 3 281 IPR017066 -
Arst5g01848 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 284 IPR013083 -
Arst5g01848 284 MobiDBLite consensus disorder prediction 32 48 - -
Arst5g01848 284 ProSiteProfiles Zinc finger RING-type profile. 237 272 IPR001841 -
Arst5g01848 284 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 217 283 - -
Arst5g01848 284 Pfam Zinc finger, C3HC4 type (RING finger) 234 272 - -
Arst5g01848 284 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01848 Arst-Chr5 23262905 23265559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01848 237 272 Miscellaneous Gene Families AT2G21380 41.667 6.11e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01848 K19042 - gmx:100790534 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01848 5 23262905 23265559 Arst5g01848 5 23262905 23265559 ECH